PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU24180.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 359aa MW: 40630 Da PI: 6.9583

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU24180.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.7	7.8e-10	47	102	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++ k + ++ + Aa a++ a++k++g PHU24180.1 47 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQNkKGRQ--AYDDEAAAAHAYDLAALKYWG 102 57*****************99998776634444..789989***********98 PP
2	AP2	51.2	3.1e-16	145	196	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g PHU24180.1 145 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 196 89**99******99966...3.6***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MAKTSSKSTA ATSSSSSSKK SDNNAIIGKP KRTRKSVPRD SPPQRSSIYR GVTRHRWTGR 60 YEAHLWDKNC WNESQNKKGR QAYDDEAAAA HAYDLAALKY WGQDTILNFP VDTYEKELKE 120 MEDQSKEEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ 180 EEAATAYDMA AIEYRGLNAV TNFDLSRYIK WLRPSDQTNN ITINNPTEPN PNPKTDDIHL 240 LPNTKEDMSF NFLQQQQQQQ QSPCADANVT ALPAGGAAAT SALGLLLQSS KFKEMLERTT 300 VVESPETPPE PDRPRRSFPD DIQTYFDGQE SSSFMEEHDI IFGDLDSLTL PMFQCELDS

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MAKTSSKSTA ATSSSSSSKK SDNNAIIGKP KRTRKSVPRD SPPQRSSIYR GVTRHRWTGR  60
YEAHLWDKNC WNESQNKKGR QAYDDEAAAA HAYDLAALKY WGQDTILNFP VDTYEKELKE  120
MEDQSKEEYI GSLRRKSSGF SRGVSKYRGV ARHHHNGRWE ARIGRVFGNK YLYLGTYATQ  180
EEAATAYDMA AIEYRGLNAV TNFDLSRYIK WLRPSDQTNN ITINNPTEPN PNPKTDDIHL  240
LPNTKEDMSF NFLQQQQQQQ QSPCADANVT ALPAGGAAAT SALGLLLQSS KFKEMLERTT  300
VVESPETPPE PDRPRRSFPD DIQTYFDGQE SSSFMEEHDI IFGDLDSLTL PMFQCELDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	2e-87	AP2 family protein