PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU23596.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 265aa MW: 29388.4 Da PI: 7.2245

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU23596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3e-07	93	117	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+ ++C+FaHg PHU23596.1 93 FKTKLCCKFRA-GVCPNISNCNFAHG 117 69*******.***********8 PP
2	zf-CCCH	43	7.6e-14	228	253	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg PHU23596.1 228 WKTRICNKWETTGYCPFGNKCHFAHG 253 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MDFIGEVSFA GGSDVIGVEN WGHGFTDQEV WATEDDYRSW NSGRSSETPS NSSQDGRHSQ 60 NRCGNEPPHK KSRNSSGEDS VNNRARAIGK MFFKTKLCCK FRAGVCPNIS NCNFAHGIEE 120 LRKPPPNWQD IVAAHESERG GGMMLEPREE HQIPIASSPD PRSESQRSYK GRHCKKFYTE 180 EGCPYGDTCT YLHDEQSRDR ESVAISVTPT VGGFGNNAAG ANLKPSNWKT RICNKWETTG 240 YCPFGNKCHF AHGAAGDKLS IYLTI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	9e-90	C3H family protein