PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU23419.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 156aa    MW: 17929.4 Da    PI: 5.8798
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU23419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF63.72e-202271150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                ++i+nk   qv fskRr  ++KKA+ELS+ C+++vavi+ s+ gkly + 
  PHU23419.1 22 EKISNKKSLQVAFSKRRGSLFKKASELSTSCGVQVAVIVESPAGKLYSFG 71
                579********************************************995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    
MENKEEETSK KKTLGRRKIP IEKISNKKSL QVAFSKRRGS LFKKASELST SCGVQVAVIV  60
ESPAGKLYSF GSPSVDSVID RFERTRLCFN NCSEVHEEEK GVMEKSNWWW EDVCPENLGL  120
EELEERMSDM QVLKNNLLKR IQDHDDLVMA DSFLNL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-24M-type_MADS family protein