PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU23212.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

WRKY

Protein Properties

Length: 391aa MW: 43793.1 Da PI: 6.6395

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU23212.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	90.9	1e-28	172	233	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg++WrKYGqK++ g+++pr+YYrCt + gC ++k+v++s+edp+++e+tY+g+H+++ PHU23212.1 172 LDDGFSWRKYGQKDILGAKHPRGYYRCTLRhvqGCLATKQVQKSDEDPTIFEVTYRGRHTCS 233 59************************988889************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
MVHQLTFKSS LHPFCLVFHV NELISVMDNY GADNTNVEFN RIINELTQGR DLVQQLQLHL 60 NAPNYNSSAS FENTREILLH NIQSKFDKAL SILQYNSTTG DNSNSPRTHS TSPAIPVFGV 120 SDSPRSSPPH SEDSDRDLES KDPHATRKRK STTPRWTKQV QIHPGAPLEG TLDDGFSWRK 180 YGQKDILGAK HPRGYYRCTL RHVQGCLATK QVQKSDEDPT IFEVTYRGRH TCSQGGGAGA 240 SASNVHPAPL PLVVTIPQNQ EPNLGNHEQY QLIPAPHQNS PEILLDFQKN LSISKDDFNF 300 NTHHDHPNNV PYIPPYSNFP SSSSSLVNTD HQDYTFVTNS STIPINNFVE NFPPSSNNMS 360 AGTSQMNNAD YQFNSMGFES NFPYNYQGFS S

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

MVHQLTFKSS LHPFCLVFHV NELISVMDNY GADNTNVEFN RIINELTQGR DLVQQLQLHL  60
NAPNYNSSAS FENTREILLH NIQSKFDKAL SILQYNSTTG DNSNSPRTHS TSPAIPVFGV  120
SDSPRSSPPH SEDSDRDLES KDPHATRKRK STTPRWTKQV QIHPGAPLEG TLDDGFSWRK  180
YGQKDILGAK HPRGYYRCTL RHVQGCLATK QVQKSDEDPT IFEVTYRGRH TCSQGGGAGA  240
SASNVHPAPL PLVVTIPQNQ EPNLGNHEQY QLIPAPHQNS PEILLDFQKN LSISKDDFNF  300
NTHHDHPNNV PYIPPYSNFP SSSSSLVNTD HQDYTFVTNS STIPINNFVE NFPPSSNNMS  360
AGTSQMNNAD YQFNSMGFES NFPYNYQGFS S

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	151	TRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G11070.1	9e-46	WRKY family protein