PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU23123.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 663aa    MW: 73014.2 Da    PI: 7.364
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU23123.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.45.7e-1072966633374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + ++e+A+a+s+g++  a ++L+rls+ a+ +g++ qRl+ay++ AL++r++     +    p+ e    +s e++ a++ ++evsP++k+++++aN a
  PHU23123.1 296 QSIIEAATAISEGKTDVAVEILTRLSQVANVRGSSDQRLTAYMVTALRSRVNP----TDYPPPVLEL---HSREHTDATQNLYEVSPCFKLGFMAANLA 387
                 6789************************************************9....2222333333...5999999********************** PP

        GRAS 102 Ileavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Ileav+ +  +++HiiDfdi+qG+Q++ Ll+aLa+++ ++p+ l+iT++ +++ g  e+l+++g  L+ +A+++gv + fn+  a ++++l+ e+L ++
  PHU23123.1 388 ILEAVADHpfNKLHIIDFDIGQGGQYLHLLHALAAKKsDKPAILKITAFTEQAGGVDERLNSIGIELKVVANRVGVCLFFNI-RACKITELNREKLGIE 485
                 *******999************************777356669********8888**************************9.899************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 p+EalaVn++++l+rl+desv++e+ rde+L+ vk lsPkvv+vveqe++ n+++Fl+r+ ea+ +y alfdsl+a+++r+++er+ +E+  l+r+  n
  PHU23123.1 486 PDEALAVNFAFKLYRLPDESVTTENLRDELLRRVKALSPKVVTVVEQEMNGNTAPFLARVNEACGHYGALFDSLDATVSRDNSERVRIEEG-LSRKMGN 583
                 *******************************************************************************************.******* PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vaceg++r+er+e ++kWr+rl++aGF++ p+s+ +a++ ++ l+     + g++v+e++g +++gW++r L+++SaWr
  PHU23123.1 584 SVACEGRDRVERCEVFGKWRARLGMAGFGSRPMSQLVANSLRAKLNSGTrgNPGFTVHEQNGGICFGWMGRILTVASAWR 663
                 ***************************************999999875546899*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    
MSSPFSGDFY GAAGGINTGR STMNNNSNSN NSLRPLYSSP LSGILPDPVT QIVHHGRPSL  60
MGKRSFAEFQ QQQQLHFLQQ QQQQQQQNQQ QQQQMMLLQQ QQQQQQGLGF YLRNVKPRSY  120
QQASPISPLS PVDFSVAAAA ASSISSEFSS ISSNSNASTR HPLPVMLQLR SQQHGFLTPP  180
IHNYSTGVSS LNPVHNRASM GVQQQLLSQE SDKKMMNCLQ ELEKQLLDDN DEEEGDTVSV  240
VTNNEWSETI QNLITPCQNQ NQNQNQIQKL ASLSPSSSTS SCASSTESPP ISCPKQSIIE  300
AATAISEGKT DVAVEILTRL SQVANVRGSS DQRLTAYMVT ALRSRVNPTD YPPPVLELHS  360
REHTDATQNL YEVSPCFKLG FMAANLAILE AVADHPFNKL HIIDFDIGQG GQYLHLLHAL  420
AAKKSDKPAI LKITAFTEQA GGVDERLNSI GIELKVVANR VGVCLFFNIR ACKITELNRE  480
KLGIEPDEAL AVNFAFKLYR LPDESVTTEN LRDELLRRVK ALSPKVVTVV EQEMNGNTAP  540
FLARVNEACG HYGALFDSLD ATVSRDNSER VRIEEGLSRK MGNSVACEGR DRVERCEVFG  600
KWRARLGMAG FGSRPMSQLV ANSLRAKLNS GTRGNPGFTV HEQNGGICFG WMGRILTVAS  660
AWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-147GRAS family protein