PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU23006.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 818aa    MW: 88816.7 Da    PI: 6.4632
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU23006.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.2e-21119174156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 ++k +++t++q++eLe++F++n++p++++r eL k+l+L++rqVk+WFqNrR+++k
  PHU23006.1 119 KKKYHRHTPYQIQELEACFKENPHPDEKARLELGKRLSLETRQVKFWFQNRRTQMK 174
                 79999************************************************999 PP
2START168.64.3e-533285521206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.......EEEEEE CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.......kaetle 83 
                 ela +a++elvk+a+ + p+W++s     e++n +e+ ++f++  +      ++ea +a+g v  ++  lve+l+d++ qW  t+        ++ ++ 
  PHU23006.1 328 ELAFAAMNELVKLAEISGPLWFRSLdgngEELNLEEYARSFPPCIGmkpanLTSEATKATGTVMINSLALVETLMDTS-QWVDTFSsivgrtsSMNLIS 425
                 57899**************************************999********************************.***********888888888 PP

                 EECTT...EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  84 vissg...galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                   s g   g lql++ae+q+  +lvp R + f+R+++q+ +g+w++vdvSvd  q+ ++  +   +++lpSg++++++sng+skv+w+eh++++++++h
  PHU23006.1 426 SSSGGsrnGNLQLIQAEFQVVATLVPvRQVKFLRFCKQHAEGVWAVVDVSVDAIQEGSQPREAGNCRRLPSGCIVQDLSNGYSKVIWIEHMEYDESTIH 524
                 87777****************************************************998899999********************************* PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +++r ++ksgl +ga++w a+lqrqce+
  PHU23006.1 525 NYYRAFIKSGLGFGAQRWIAALQRQCEC 552
                 **************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 818 aa     Download sequence    
MSFGGFIGSS SGGDGGGGGS GVSRLVGDSP YEAMPTATVA QSQLITSSLP QSIFNSSPLS  60
LALKPKMEGA SDMSLLAENF GAVAMGRSDE NDSRSPSDHL DGGGSGDDME AHVGSSSRKK  120
KYHRHTPYQI QELEACFKEN PHPDEKARLE LGKRLSLETR QVKFWFQNRR TQMKTQLERH  180
ENSMLKQEND KLRLENMAMK EAMRGPTCHQ CGGQAILGEI HMEEHHLKIE NARLRDEYNR  240
ICLMANKVLG RPLSSFPSPM PAGMGNFGLE LAVGRNGFGA MNSVDAALPM GLDFGNGISS  300
ATIPVISPRP IPNMTGIDVS FDKTVLMELA FAAMNELVKL AEISGPLWFR SLDGNGEELN  360
LEEYARSFPP CIGMKPANLT SEATKATGTV MINSLALVET LMDTSQWVDT FSSIVGRTSS  420
MNLISSSSGG SRNGNLQLIQ AEFQVVATLV PVRQVKFLRF CKQHAEGVWA VVDVSVDAIQ  480
EGSQPREAGN CRRLPSGCIV QDLSNGYSKV IWIEHMEYDE STIHNYYRAF IKSGLGFGAQ  540
RWIAALQRQC ECLAIIMSST VSSGDNAVVG PSGRRSIAML ARRVTCNFCG GVCGTFYKWE  600
PIQSGSGEET KLMMRKSVGE LGEPSGVMLS ATRTIWLPIT HQRLFDFLRN AQTRRQWDVL  660
FHGDAMHEIV HIAKGQDLGN SISLYRTNVT GSDGNQSSML YLQDSCTDVS GSIVSYAAVD  720
TAQMNVVMSG GDSSCVTFLP SGFAIVPDCF GNSNGVTSNG MLEKEDNGGR NKGSFLTVGY  780
QILVNNLPGG NLTMESVNTI NSFVSRTLDG IKTIFRCN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein