PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU22945.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 434aa MW: 47717.7 Da PI: 7.6392 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.9 | 1.8e-08 | 112 | 133 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+++ + G C yG++C+F H+ PHU22945.1 112 KVCNYWVK-GNCTYGNTCRFLHS 133 68******.*************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 434 aa Download sequence |
MEMDGSKRVF HRLGPSQLDN SNNKQQKVCF HWRAGRCNRF PCPFLHREIQ GPPPHQQQHV 60 AGNGMSSSSS KRPHGFNDDN RGGGGMRRNP NFNNTWGRTA PGGGAVVKKT EKVCNYWVKG 120 NCTYGNTCRF LHSWTTGDCF TLLTQLEGHQ KVVTGIALPS GSDKLYSGGT DKTVRVWDCQ 180 SGQCAGVVNF DGEVGSMLSE GPWIFVGLTN LVKAWNTQTG TDLSLNGPVG QVYALVVGND 240 MLLAGTEDGI LAWKYNGSTN NFDPVKALTG HTHHVVSLVV GSNRLYSGSM DNSIRVWNLE 300 TLECVQVLTD HTSVVMSVLC WDQFLLSCSL DKTIKVWAAN ESGNLEVTYT HQEERGLLAL 360 CGMHDSEAKP VLLCSCNDNT IRVYDLPSFS ERGKIFSKEG VRRIEIGPAG LFFTGDESGQ 420 VRVWKWLTES SSTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25440.1 | 0.0 | C3H family protein |