PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU22658.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 370aa    MW: 41741.6 Da    PI: 5.9947
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU22658.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF38.21.9e-121052244
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                +ien+ +r  t+ kR++g+ KKA  LS LC++e a ++fs+ +
  PHU22658.1 10 FIENDGKRRDTYRKRQKGLVKKAGDLSKLCEVETASVMFSPYQ 52
                8***************************************976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    
MSRKKVNFAF IENDGKRRDT YRKRQKGLVK KAGDLSKLCE VETASVMFSP YQKEPIVFPN  60
NDKTINIFTR FKQLPPLFQS KNMMTIDMFT KKRIAKMEKK LEKLRKENNI KEITILMEDV  120
MKGKDVTIDM NPADVNDMML MMRQHLKKIH EMMKNKADGD GSTSSASYPI LGQVVLRETN  180
SEGPMDPLLS PTDGPIPMVS MMAPLTIPGG IDFEGPRAPL FFPDVDVDPM WDLPMVDLPI  240
IPSFSHTEVP QQLYHLEDPL MTPPQMVSHV DPLLVPHYSS FSSEIFSPMV PQLYSSTSQQ  300
IELTRDPFFP QIPPTTIDLP VSSLGITSPM CTPVFPLARL EMDPSMSIPT MGPSIPDNQN  360
YSVGFPQSPT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326RKKVNFAFIENDGKRRDTYRKRQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.22e-22M-type_MADS family protein