PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU22596.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 569aa MW: 62295.2 Da PI: 7.9926

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU22596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.7	1.5e-11	209	233	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C ++++t tCk+Gd+CkF H+ PHU22596.1 209 GEKDCAHYMQTRTCKFGDSCKFDHP 233 7889********************8 PP
2	zf-CCCH	36.9	6.2e-12	258	284	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++t Ck+G+rCkF+H++ PHU22596.1 258 PGEPECPYFMKTQKCKFGNRCKFNHPK 284 5799*********************96 PP
3	zf-CCCH	36.1	1.1e-11	307	331	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C f+++tGtCk+G +CkF+H++ PHU22596.1 307 EPSCTFYLKTGTCKFGVTCKFHHPR 331 577********************96 PP
4	zf-CCCH	37.1	5.3e-12	381	407	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++tG CkyG++C+++H++ PHU22596.1 381 PGEVDCPFYLKTGSCKYGGTCRYNHPE 407 57899********************96 PP
5	zf-CCCH	42.8	8.5e-14	460	483	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+f+++tG+CkyG+rCkF+H+ PHU22596.1 460 QIECDFYMKTGECKYGERCKFHHP 483 568********************9 PP
6	zf-CCCH	37.3	4.7e-12	517	538	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++++tG CkyG++CkF H+p PHU22596.1 517 CPYYMKTGMCKYGATCKFDHPP 538 ********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence
MNSFKKFRVL FDLFTNKQTK VGEIKESKTF PCSCANLQSA VWSEICTQEM ANQLYGYNPS 60 SNAGMAGSNL ARTTTRSMDD YLSADNKTLL GSSSYFTTSG YSFPSSSPSM LFNQSDSYTP 120 TASRIPGLAT QSSYGPPGVD VTQPSAVVAA DSYFSSLKRS SSDALYHQTL LGARNTIGQA 180 EAWFSANPLA KRPRFESASN LSIYPQRPGE KDCAHYMQTR TCKFGDSCKF DHPIWVPEGG 240 IPDWKEVPVT TESLPERPGE PECPYFMKTQ KCKFGNRCKF NHPKDNTTYL GSVQNSGVSD 300 LPERPSEPSC TFYLKTGTCK FGVTCKFHHP RDIQLPAPEQ ENGSVGNPGS AKNEMTEDVN 360 LVKPLSVPAL LHNSKGLPIR PGEVDCPFYL KTGSCKYGGT CRYNHPERNA AGIGPALVAS 420 PAAHWNIGMI NPAASLLQNF DPRLTMLGLL PPVYPQRPGQ IECDFYMKTG ECKYGERCKF 480 HHPLDRSAPV VSAKDVQQPN VKLTLAGLPR REGAVHCPYY MKTGMCKYGA TCKFDHPPPG 540 EVLGMSTSQG TSSSFEAEDN VNVNESQGS

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence

MNSFKKFRVL FDLFTNKQTK VGEIKESKTF PCSCANLQSA VWSEICTQEM ANQLYGYNPS  60
SNAGMAGSNL ARTTTRSMDD YLSADNKTLL GSSSYFTTSG YSFPSSSPSM LFNQSDSYTP  120
TASRIPGLAT QSSYGPPGVD VTQPSAVVAA DSYFSSLKRS SSDALYHQTL LGARNTIGQA  180
EAWFSANPLA KRPRFESASN LSIYPQRPGE KDCAHYMQTR TCKFGDSCKF DHPIWVPEGG  240
IPDWKEVPVT TESLPERPGE PECPYFMKTQ KCKFGNRCKF NHPKDNTTYL GSVQNSGVSD  300
LPERPSEPSC TFYLKTGTCK FGVTCKFHHP RDIQLPAPEQ ENGSVGNPGS AKNEMTEDVN  360
LVKPLSVPAL LHNSKGLPIR PGEVDCPFYL KTGSCKYGGT CRYNHPERNA AGIGPALVAS  420
PAAHWNIGMI NPAASLLQNF DPRLTMLGLL PPVYPQRPGQ IECDFYMKTG ECKYGERCKF  480
HHPLDRSAPV VSAKDVQQPN VKLTLAGLPR REGAVHCPYY MKTGMCKYGA TCKFDHPPPG  540
EVLGMSTSQG TSSSFEAEDN VNVNESQGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	0.0	C3H family protein