PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU22470.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 102aa    MW: 11410.1 Da    PI: 10.7365
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU22470.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.7e-171865249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +i nk + +vtfskRr g++KK + +S LC+a++ vi+ s+ gk++ +
  PHU22470.1 18 KIVNKNRLKVTFSKRRGGLFKKENQISALCGAQIVVIVKSPAGKIFSF 65
                789*****************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    
METSKGKNMG RQNIAIEKIV NKNRLKVTFS KRRGGLFKKE NQISALCGAQ IVVIVKSPAG  60
KIFSFGNPSV DYVIRQFENR GFGEDEFTAA GEKGVLQNSN WW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.14e-22M-type_MADS family protein