PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU22439.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 497aa MW: 55122.8 Da PI: 8.7085

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU22439.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	83	105	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PHU22439.1 83 FVCEICNKGFQRDQNLQLHRRGH 105 89*******************88 PP
2	zf-C2H2	11.6	0.00089	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ PHU22439.1 159 WKCDKCSKIYAVQSDWKAHSKTC 181 58*****************9998 PP
3	zf-C2H2	11	0.0014	189	207	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg+ Fsrk+++++H + PHU22439.1 189 DCGTIFSRKDSFVTHRAFC 207 8**************8765 PP

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence
MRNKQIYHQS NIITSSGCFS SHQPVIFSEE ATSVSSMSQN ISIHQQQQQM QKIKKKRSLP 60 GNPDPDAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKESK 120 KKAYVCPEPT CVHHHPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKIYAV QSDWKAHSKT 180 CGTREYRCDC GTIFSRKDSF VTHRAFCDAL AEESARLSAN SALMHRAVIA STIVNSSAIG 240 EPNFHLNQSS LFPYPTNQRH FANPPPPPMA AATTVTTHMS LNPWDPQIPL NPNPITHEEH 300 HNNHNILHPV PIKTESIHIP FTSSLPFYHE HYYPVIHKGG SFSIPSSPQL SATALLQKAA 360 TMGTHSTVSH VNSVMAQLGH HVTPKLSPEG FLSFASENMS SNWQKRENLT RDFLGLTGDH 420 HHDQDHRDES SSAGGGGGGG FMANGGNGLL SSFGGDGMHD YQDTLYDRDH SMLKHHQLGF 480 GFGAAAAEST TGTWGDC

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence

MRNKQIYHQS NIITSSGCFS SHQPVIFSEE ATSVSSMSQN ISIHQQQQQM QKIKKKRSLP  60
GNPDPDAEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LKQRSNKESK  120
KKAYVCPEPT CVHHHPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKIYAV QSDWKAHSKT  180
CGTREYRCDC GTIFSRKDSF VTHRAFCDAL AEESARLSAN SALMHRAVIA STIVNSSAIG  240
EPNFHLNQSS LFPYPTNQRH FANPPPPPMA AATTVTTHMS LNPWDPQIPL NPNPITHEEH  300
HNNHNILHPV PIKTESIHIP FTSSLPFYHE HYYPVIHKGG SFSIPSSPQL SATALLQKAA  360
TMGTHSTVSH VNSVMAQLGH HVTPKLSPEG FLSFASENMS SNWQKRENLT RDFLGLTGDH  420
HHDQDHRDES SSAGGGGGGG FMANGGNGLL SSFGGDGMHD YQDTLYDRDH SMLKHHQLGF  480
GFGAAAAEST TGTWGDC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	1e-109	C2H2 family protein