PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU20733.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 338aa    MW: 38722.4 Da    PI: 5.8076
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU20733.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-28958150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s
  PHU20733.1  9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58
                68***********************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN  60
KSIEDIMARY VNLPEHDRGR LHNQEHLQRA IAKIKCEADR TYHAPSSPAS VDSHIEEFQQ  120
EIIRYKTQLQ DTERRLRMYE GDFCEITTVC EAQYREEVLQ ETLKQVQARK QVLEENYNSP  180
QPQTTTQPQM DYPAQNVSIV NNVATSDSIA NSTFMDWVPH SQRDPHVQIL NFLDSNGLLP  240
FRDEADQRMD NMLAPPLNQQ LHTANVPAVS NHLSPSSRFD QNDQPRPTSF DGIIDVNNAP  300
WPPLYPTGDD PFPVSQPRER ALLELFLSQL TPVNQEHL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-53MIKC_MADS family protein