PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU20422.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 344aa MW: 38547.2 Da PI: 6.3529

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU20422.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.8	7.1e-12	133	184	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ +++l+P + + ++ + a+i A++++k+L+ PHU20422.1 133 QRMTHIAVERNRRKQMNEYLAVIKSLMPAS---YVQRGDQASIIGGAINFVKELE 184 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MALETVIYNQ ESFGYGCKEY YNIPASNNNL GNFNYNYELD ILQGGEGEMS FTSLLDTNIN 60 KEESSSSLMY NNSTREYNNW DPNSSMEDHQ LFMEASPAAV MGTPTARAAA AASGRRKRRR 120 TRSCKNKEEL ENQRMTHIAV ERNRRKQMNE YLAVIKSLMP ASYVQRGDQA SIIGGAINFV 180 KELEHHLQTL EAQKRSHSLK QQEEQQHSDN HGSSSTPLFS DYFAFPQYST HSKSTTPAAA 240 AGCDSPLAKE KMFALADIEV SMAESHANLK ILSKRRPKQL LKIVAGLQCL WLNVLHLNVT 300 TVDQMVLYSL SLKLEEGCQL TTADEIADSV NQLLGRIQEE AAST

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MALETVIYNQ ESFGYGCKEY YNIPASNNNL GNFNYNYELD ILQGGEGEMS FTSLLDTNIN  60
KEESSSSLMY NNSTREYNNW DPNSSMEDHQ LFMEASPAAV MGTPTARAAA AASGRRKRRR  120
TRSCKNKEEL ENQRMTHIAV ERNRRKQMNE YLAVIKSLMP ASYVQRGDQA SIIGGAINFV  180
KELEHHLQTL EAQKRSHSLK QQEEQQHSDN HGSSSTPLFS DYFAFPQYST HSKSTTPAAA  240
AGCDSPLAKE KMFALADIEV SMAESHANLK ILSKRRPKQL LKIVAGLQCL WLNVLHLNVT  300
TVDQMVLYSL SLKLEEGCQL TTADEIADSV NQLLGRIQEE AAST

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	120	RKRRR
2	116	121	RKRRRT
3	134	145	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	6e-87	bHLH family protein