PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU20051.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 867aa MW: 97094.6 Da PI: 9.0603

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU20051.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.2	5e-07	169	189	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 Cr+f + G C++G+ C+F+H+ PHU20051.1 169 VCRDFPA-GKCRRGSDCRFIHP 189 5999999.*************9 PP
2	zf-CCCH	21.2	5.1e-07	252	274	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t Cr++ + GtC+ G++CkF+H+ PHU20051.1 252 TITCRNYVK-GTCRWGASCKFSHD 274 668****.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 867 aa Download sequence
MGESEKRRKS LWDAEEPNST NYEEWGAPKA DNLWQSKSRS DWLSGDNVTG TEELRKENYH 60 YKSMSPAFER RGRRSNSHSP DNGRTQPRRY SGRARSRSRS RSRSRGRGEG RSRSRSRGRD 120 RFRTSSRSRS RDRGSMRVQN RSRSPLHNYR RDSYVSGDRR TGLRTSSQVC RDFPAGKCRR 180 GSDCRFIHPD AANHRGGGHS EDNVAERLGS RPERGHISRY TDIEGPGYQS RDRLPDVHHL 240 EDELHRNRSR GTITCRNYVK GTCRWGASCK FSHDGASGDN YDKGTRSASF DHGQDNPASR 300 SGKSLCEYFA AGKCYKDNCK FSHDASSRNH EIRHSDNTGG HRFNDKNNWL NAPKWDDEGR 360 TSDLVKASGW DETAPKWDDE GRPSDLVKAS GWDETAVRKD TAVSVLTDRT NERPGHSFEN 420 ENRAWGSTEP QFMNSERQRA ASPHRGSAGH LNTLNISESS VIQNFTNAQD IHLTSQASDL 480 NMERTSAHVL GHKSNQGSSG IILSTIDTQP YGSGGSFVET QGLTDDSIAR TLGSNVVNEF 540 MNSRDSVHHV GLPGQSFSGT GIGMKSEHSA VLNGAHQEPN VFLPIPSTGH NKREAPGTPE 600 MLEFKVPPNL SGTVTGEQVH QMETSPTSMI KKFEEGLREA QLQSVLNPSG PSGMLPSNPI 660 SSLVHALYGQ TNPEMRVPDN YHPPDGFELN TSGNLPNNSF HLDRDSNKAP MEQMNQSYAV 720 DPELGNNDQI DEVKQQENKL VEVNGKDKLA LEESKDGLEN NHPGAMHMHA KIEEGSCNKD 780 EKAMRLFKNA LIEFVKEILK PTWKEGKMSR EVHKTVVKKA VDKVTSAMQA EQVPKTQEKI 840 DQYLSYSKPK IAKLVQAYVE RLLKNEA

Sequence ? help Back to Top

Protein Sequence Length: 867 aa Download sequence

MGESEKRRKS LWDAEEPNST NYEEWGAPKA DNLWQSKSRS DWLSGDNVTG TEELRKENYH  60
YKSMSPAFER RGRRSNSHSP DNGRTQPRRY SGRARSRSRS RSRSRGRGEG RSRSRSRGRD  120
RFRTSSRSRS RDRGSMRVQN RSRSPLHNYR RDSYVSGDRR TGLRTSSQVC RDFPAGKCRR  180
GSDCRFIHPD AANHRGGGHS EDNVAERLGS RPERGHISRY TDIEGPGYQS RDRLPDVHHL  240
EDELHRNRSR GTITCRNYVK GTCRWGASCK FSHDGASGDN YDKGTRSASF DHGQDNPASR  300
SGKSLCEYFA AGKCYKDNCK FSHDASSRNH EIRHSDNTGG HRFNDKNNWL NAPKWDDEGR  360
TSDLVKASGW DETAPKWDDE GRPSDLVKAS GWDETAVRKD TAVSVLTDRT NERPGHSFEN  420
ENRAWGSTEP QFMNSERQRA ASPHRGSAGH LNTLNISESS VIQNFTNAQD IHLTSQASDL  480
NMERTSAHVL GHKSNQGSSG IILSTIDTQP YGSGGSFVET QGLTDDSIAR TLGSNVVNEF  540
MNSRDSVHHV GLPGQSFSGT GIGMKSEHSA VLNGAHQEPN VFLPIPSTGH NKREAPGTPE  600
MLEFKVPPNL SGTVTGEQVH QMETSPTSMI KKFEEGLREA QLQSVLNPSG PSGMLPSNPI  660
SSLVHALYGQ TNPEMRVPDN YHPPDGFELN TSGNLPNNSF HLDRDSNKAP MEQMNQSYAV  720
DPELGNNDQI DEVKQQENKL VEVNGKDKLA LEESKDGLEN NHPGAMHMHA KIEEGSCNKD  780
EKAMRLFKNA LIEFVKEILK PTWKEGKMSR EVHKTVVKKA VDKVTSAMQA EQVPKTQEKI  840
DQYLSYSKPK IAKLVQAYVE RLLKNEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	93	101	RARSRSRSR
2	93	103	RARSRSRSRSR
3	95	103	RARSRSRSR
4	95	105	RARSRSRSRSR
5	97	105	RARSRSRSR
6	97	107	RARSRSRSRSR
7	99	107	RARSRSRSR
8	111	119	RARSRSRSR
9	111	121	RARSRSRSRSR
10	113	123	RARSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	7e-15	C3H family protein