PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU19964.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C2H2

Protein Properties

Length: 516aa MW: 57597.2 Da PI: 6.5681

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU19964.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.6e-07	264	285	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H PHU19964.1 264 FCTICGKGFKRDANLRMHMRGH 285 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MDPDDSLTED PWIKSSSSGN ELLKIMPSDN HSFTNFNLHA QKWEGSSYLD HQIRIEQQFS 60 GFTKPKHTSE MDQQGNHRNE NHDSTGIRDW DPRTLLNNLS FLEQKIHQLQ ELVHLIVGRR 120 GQDGVQGNDL IVQQQQLITA DLTSIIVQLI STAGSLLPTM KHTLSSANPA ANQLGQVGGV 180 TIPSTIGTSA SAGGLTCNDS VAKVEDQSNH VDQLRDCGIE QNHPADEHEL KDEDEAEEEE 240 NLPPGSYEIL QLEKEEILAP HTHFCTICGK GFKRDANLRM HMRGHGDEYK TPAALAKPHK 300 EPSSEPTLIK RYSCPYVGCK RNKEHKKFQP LKTILCVKNH YKRTHCEKAY TCSRCNIKKF 360 SVIADLKTHE KHCGKDKWLC SCGTTFSRKD KLFGHISLFQ GHTPAVSPDE TKGSAGMSDR 420 GQTSEVTMKA RQENFKVNAS HGNEFQNPGV VKEGAYGSPS SYFSPLNFDT SNLNGFQEFP 480 RPPFDESDSS LSFLLSGSCE YPPHKAAKYM SSTEME

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MDPDDSLTED PWIKSSSSGN ELLKIMPSDN HSFTNFNLHA QKWEGSSYLD HQIRIEQQFS  60
GFTKPKHTSE MDQQGNHRNE NHDSTGIRDW DPRTLLNNLS FLEQKIHQLQ ELVHLIVGRR  120
GQDGVQGNDL IVQQQQLITA DLTSIIVQLI STAGSLLPTM KHTLSSANPA ANQLGQVGGV  180
TIPSTIGTSA SAGGLTCNDS VAKVEDQSNH VDQLRDCGIE QNHPADEHEL KDEDEAEEEE  240
NLPPGSYEIL QLEKEEILAP HTHFCTICGK GFKRDANLRM HMRGHGDEYK TPAALAKPHK  300
EPSSEPTLIK RYSCPYVGCK RNKEHKKFQP LKTILCVKNH YKRTHCEKAY TCSRCNIKKF  360
SVIADLKTHE KHCGKDKWLC SCGTTFSRKD KLFGHISLFQ GHTPAVSPDE TKGSAGMSDR  420
GQTSEVTMKA RQENFKVNAS HGNEFQNPGV VKEGAYGSPS SYFSPLNFDT SNLNGFQEFP  480
RPPFDESDSS LSFLLSGSCE YPPHKAAKYM SSTEME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-171	C2H2 family protein