PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU19943.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

Trihelix

Protein Properties

Length: 381aa MW: 43396.4 Da PI: 5.2525

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU19943.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	81.2	1.4e-25	71	152	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W ++e+++Li +rre+++ ++++k++k+lW+++s kmre+gf rsp++C++kw+nl k++kk k+++ ++ s +++y++++e PHU19943.1 71 WVQEETRVLIGLRREIDSLFNTSKSNKHLWDQISMKMREKGFDRSPTMCTDKWRNLLKEFKKAKQNQDRN---GSAKMSYYKEIE 152 ***************************************************************99984...566899*998 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MYVSDKPQAI DFYKEEVEDP ESHKMIVDVV TGNTQLPPGH QIGDTTSSGG EENCANPCSD 60 LKTPKKRAET WVQEETRVLI GLRREIDSLF NTSKSNKHLW DQISMKMREK GFDRSPTMCT 120 DKWRNLLKEF KKAKQNQDRN GSAKMSYYKE IEEILRERIN SGGGYKSPPA PKVDSFMHFA 180 EKGLDDTSIT FGPVEENGRP TLNLERRLDH DGHPLAITAA DAVTASGVSP WNWRETPGTG 240 EPSQSYEGRV ISVKWGDYTK RIGIDGTADA ITEAIKSAFR LRTKRAFWLE DEDNIVRTLD 300 RDMPLGNYTL HVDEGLTIKI CMYDEADHLP VHTEDKTFYS EDDFQNFLSR RGWTCLREYN 360 GYRNVDSMDE LCPGAVYRGA N

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MYVSDKPQAI DFYKEEVEDP ESHKMIVDVV TGNTQLPPGH QIGDTTSSGG EENCANPCSD  60
LKTPKKRAET WVQEETRVLI GLRREIDSLF NTSKSNKHLW DQISMKMREK GFDRSPTMCT  120
DKWRNLLKEF KKAKQNQDRN GSAKMSYYKE IEEILRERIN SGGGYKSPPA PKVDSFMHFA  180
EKGLDDTSIT FGPVEENGRP TLNLERRLDH DGHPLAITAA DAVTASGVSP WNWRETPGTG  240
EPSQSYEGRV ISVKWGDYTK RIGIDGTADA ITEAIKSAFR LRTKRAFWLE DEDNIVRTLD  300
RDMPLGNYTL HVDEGLTIKI CMYDEADHLP VHTEDKTFYS EDDFQNFLSR RGWTCLREYN  360
GYRNVDSMDE LCPGAVYRGA N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25990.1	1e-173	Trihelix family protein