PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU19859.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 582aa MW: 64111.5 Da PI: 7.0367

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU19859.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75	8.5e-24	114	216	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+ltpsd+++ g +++p+ +a+++ ++ + l+++d +g +We+++iyr++++r++lt+GW++Fv++++L +gD+ vF +++ +++el PHU19859.1 114 FVKILTPSDANNGGGFSVPRFCADSIfprlnfvADPPVQ--NLVIRDIHGSEWEFRHIYRGTPRRHLLTTGWSKFVNSKKLVSGDSAVFIRKN-RTGEL 209 89*******************999*98767777..5********************************************654.88999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+r+ PHU19859.1 210 YVGVRRA 216 **996 PP
2	Auxin_resp	78.5	1.6e-26	262	345	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ +++Fev +Pr +++Fvvk+e ve++ ++ ++vG+R+kma+etedss++ + +Gtv++v ++ W++S+Wr+L+ PHU19859.1 262 AAEMAARGMPFEVSCYPRPDWANFVVKAEAVEASSNMFWTVGTRVKMAIETEDSSRTACfQGTVSSVILPENGPWRGSPWRMLQ 345 688999**************************************************99********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 582 aa Download sequence
MQPPTAAAGN DVDPTIWRAI AGNSVRIPAV GSRAYYFPQG HAEHASSTSP VLLSGVIPPF 60 ILCRVLSVRF LADAVTDEAF AKIFLVPVNQ CDGNDVNTVN VDEEEDVEKE VVSFVKILTP 120 SDANNGGGFS VPRFCADSIF PRLNFVADPP VQNLVIRDIH GSEWEFRHIY RGTPRRHLLT 180 TGWSKFVNSK KLVSGDSAVF IRKNRTGELY VGVRRAIRGN ENCQRWTSTL LKREQTSSSG 240 SNGEVRWRTG QGRLPMEAVK EAAEMAARGM PFEVSCYPRP DWANFVVKAE AVEASSNMFW 300 TVGTRVKMAI ETEDSSRTAC FQGTVSSVIL PENGPWRGSP WRMLQITWDE PEVLQHAKRV 360 NPWQVACILP TPQLHFGFPP SKKIKRLNWL PHDGGEKLFF PMTGLSNPMI GLCSPSLGNC 420 TSFSAGMQGA RQNQICVSSL SNVKSNNNLG LCTNNSLDEE INPKLESVST KLNIGSSYSD 480 NLSPDSQSSV HFWDNELVAK PGSSSLTKQR VNSFLLFGKV IHVENVGGFD GFGCCENDSI 540 QVFKEIDGAF KSNVSQNKPC FELFDNVDVQ HQRASAVEAC SL

Sequence ? help Back to Top

Protein Sequence Length: 582 aa Download sequence

MQPPTAAAGN DVDPTIWRAI AGNSVRIPAV GSRAYYFPQG HAEHASSTSP VLLSGVIPPF  60
ILCRVLSVRF LADAVTDEAF AKIFLVPVNQ CDGNDVNTVN VDEEEDVEKE VVSFVKILTP  120
SDANNGGGFS VPRFCADSIF PRLNFVADPP VQNLVIRDIH GSEWEFRHIY RGTPRRHLLT  180
TGWSKFVNSK KLVSGDSAVF IRKNRTGELY VGVRRAIRGN ENCQRWTSTL LKREQTSSSG  240
SNGEVRWRTG QGRLPMEAVK EAAEMAARGM PFEVSCYPRP DWANFVVKAE AVEASSNMFW  300
TVGTRVKMAI ETEDSSRTAC FQGTVSSVIL PENGPWRGSP WRMLQITWDE PEVLQHAKRV  360
NPWQVACILP TPQLHFGFPP SKKIKRLNWL PHDGGEKLFF PMTGLSNPMI GLCSPSLGNC  420
TSFSAGMQGA RQNQICVSSL SNVKSNNNLG LCTNNSLDEE INPKLESVST KLNIGSSYSD  480
NLSPDSQSSV HFWDNELVAK PGSSSLTKQR VNSFLLFGKV IHVENVGGFD GFGCCENDSI  540
QVFKEIDGAF KSNVSQNKPC FELFDNVDVQ HQRASAVEAC SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	1e-157	ARF family protein