PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU19196.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family HD-ZIP
Protein Properties Length: 728aa    MW: 80234.9 Da    PI: 5.6345
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU19196.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.55.4e-1962117156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++ +++t+ q++e+e++F+++++p+ ++r+eL k+lgL+  qVk+WFqN+R+++k
  PHU19196.1  62 KKRYHRHTQIQIQEMESFFKECPHPDDKQRKELGKRLGLEPLQVKFWFQNKRTQMK 117
                 688899***********************************************998 PP
2START210.65.9e-662484681206
                 HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
       START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                 ela +a++el+++a+ +ep+W k      e + ++e+ ++f+++ +      ++ea+r+s+vv+m++ +lve+l+d++ qW+  +a    +  tlev+s
  PHU19196.1 248 ELAVAAMEELIRMAQTGEPLWIKTLdnssETLSEEEYFRTFPRGIGpkplgLTSEASRESAVVIMNHINLVEILMDVN-QWTSVFAglvsRSLTLEVLS 345
                 57899*******************999999999**********999********************************.******************** PP

                 TT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXH CS
       START  87 sg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlph 178
                 +g      galq+m+ae+q++splvp R+ +fvRy++ + +g+w++vdvS+d+ ++      v R +++pSg+li++++ng+skvtw+ehv++++r++h
  PHU19196.1 346 TGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKHHADGTWAVVDVSLDHLRPTA----VSRDRRRPSGCLIQELPNGYSKVTWIEHVEVDDRSVH 440
                 *******************************************************976....79999******************************** PP

                 HHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
       START 179 wllrslvksglaegaktwvatlqrqcek 206
                 +++r+lv+sgla+gak+wvatl+rqce+
  PHU19196.1 441 NIYRPLVNSGLAFGAKRWVATLDRQCER 468
                 **************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 728 aa     Download sequence    
MFQPNMFESH HHLLDMSHNK SPENDLDLIR DDEFESKSMA DIMENNPCGD DNEDPNQRPN  60
KKKRYHRHTQ IQIQEMESFF KECPHPDDKQ RKELGKRLGL EPLQVKFWFQ NKRTQMKAQH  120
ERHENSELRA ENEKLRAENI RYKEALGNAS CPNCGGPASI GEMSFDEQHL RIENARLREE  180
IDRISGIAAK YVGKPMLTYP NLSTTGPLDL GVGNFGPQTG LVGEIYNASD LLRSISGPTD  240
ADKPIIIELA VAAMEELIRM AQTGEPLWIK TLDNSSETLS EEEYFRTFPR GIGPKPLGLT  300
SEASRESAVV IMNHINLVEI LMDVNQWTSV FAGLVSRSLT LEVLSTGVAG NYNGALQVMT  360
AEFQVPSPLV PTRENYFVRY CKHHADGTWA VVDVSLDHLR PTAVSRDRRR PSGCLIQELP  420
NGYSKVTWIE HVEVDDRSVH NIYRPLVNSG LAFGAKRWVA TLDRQCERLA SAMAINIPTG  480
EVGVITSPDG RKSMLKLAER MVMSFCAGVG ASTAHTWTTL SGSGADDVRV MTRKSIDDPG  540
RPPGIVLSAA TSFWLPVSPK RVFDFLRDEN SRNEWDILSN GGLVQEMAHI ANGRDPGNCV  600
SLLRVNSGNS SQSNMLILQE SSTDSTGSYV IYAPVDIVAM NVVLSGGDPD YVALLPSGFA  660
ILPDGGGGIN TTCTSGSLLT VAFQILVDSI PTAKLSLGSV ATVNSLLKCT VERIKNALAC  720
DTMPDGKI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein