PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU18805.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 775aa MW: 86566.4 Da PI: 4.3404 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19 | 2.6e-06 | 310 | 329 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C ffar G+C G++C+F H PHU18805.1 310 RCEFFAR-GWCIKGNSCRFLH 329 5******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 775 aa Download sequence |
MASSGAAAAD PIPMRDEFEE DEEEEYEEIE VEVEEEIEEE EEVEEEEEEE EEEVQAEEET 60 GEGSIPMNVD DQKEEEEEKG QGSSPLNVAH QKEEAEEEVE AEEEEEVEEE EEEEEEENGK 120 GSSPLSVDGQ KEEEEEEEEV QDEVEKGQGS SPLNVDNQKD GNQILEPLGL EQHLRPAFST 180 QQEPVANLLQ HTPLIKGGND SCRISNSDET RERIDGKRIL INSDVQASGC ECGETNTKRI 240 QPFGQELDAE ILTDVKGKEA VGVQFTEGSD QEAVNDLKQT SRRLDVLKTR QRSLSPAADS 300 RGGSKRLAMR CEFFARGWCI KGNSCRFLHI KEHVTSHEKD GSLDETMMKS KIADDKGLEE 360 NCKTSVLDGS SDSVQSAVRS GENLKLREEL YMRTGGPSST PDIGRESLGF NPYLAAYSAS 420 SSQFLKDGSL HKNSLHHELR HCSSSRKIDA LDDQRLLDSS QEYSSSRSTS LQHKSSAFPS 480 SKARLSQIDL SRDTRHSSDY RTVGSFDDWE PSVPFRPSFL LTQMIGFPES LYDPIRDSID 540 QSNVGDGPSK FSTSGKGGSV LTKHMQTNAD PVSTGTLGPE QSSNKVPISG QIHHRDILPD 600 NLSDKDLPSN ETDTADTAVA HQENMNTSSK EEKLSSSANL KGVTKADKFN LSTELLHSRP 660 RKKTHLESER LRQGNEIDTD WKTDRSVNKE SRVMKQFHAA LVEFVKELLR PTWSEGLMSK 720 DAYKMIVKKT VDKVEHSLHP NQIPNTAESI EEYFDISQPK LAKLIEAYVE KYGKA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 8e-29 | C3H family protein |