PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU18778.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 540aa    MW: 60156.5 Da    PI: 5.9814
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU18778.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.61.3e-1281715402374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 +elL++cAeavs+gd++ a+al++ l++ +s +g+pmqRl ay++e+L+arl++s+s +yk+l+++e +   sse +++++++++++P++kf++  aN 
  PHU18778.1 171 KELLIACAEAVSDGDFSVAEALMNVLEQKVSVSGEPMQRLSAYMLEGLRARLFSSGSIIYKKLKCNEPT---SSELISYMQVLYHICPYYKFAYTSANV 266
                 789*****************************************************************9...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  I ea+ +e+r+HiiDf+i qG QW+ L++ La Rp+gpp + iTgv++++s   +   l+ +gerL+kfAe++gvpfef++ +  +  +++le+++++
  PHU18778.1 267 VIDEAMRNENRIHIIDFQIAQGSQWMFLMHNLARRPGGPPFVHITGVDDSQSAhaRGGGLHLVGERLSKFAESCGVPFEFHA-AGISGCEVQLENIHIR 364
                 *************************************************9988889999***********************.788999********** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 +gEalaVn+ + lh+++desv++ ++rd++L+lvkslsPk+v++veqe+++n++ Fl rf e+++yy+a+f+s++a  pr++++ri+ E+++++r++vn
  PHU18778.1 365 HGEALAVNFPYVLHHMPDESVTTVNHRDRLLRLVKSLSPKIVTLVEQESNTNTSAFLPRFRETMDYYTAMFESIDAARPRDDKQRISAEEHCVARDVVN 463
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++acega+r+erhe ++kW++rl++aGF++ pls ++ + +  +l+ ++ + yr+ e++g+l+lgWk+r+L + SaWr
  PHU18778.1 464 IIACEGADRVERHELFGKWSMRLMMAGFTQCPLSPSVGEAITGVLKDFSPN-YRLAESKGALYLGWKNRALATSSAWR 540
                 *************************************************55.*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    
MQASQRPQSS GGVHKLYHQP TAKVEQYYSP YNVVNNNSND TSSSGTQHSY QTQNEQFFTL  60
DSLPDAGYVI YDSPPALSVS SNWSPFSPQC TQSYISDQHH SSDNTNGSPL SGCSVVNDGN  120
ELKHVLREMA NNLLGPDSDI DEDSSCSFND EVSKPSKWNR LLEIAPSLDM KELLIACAEA  180
VSDGDFSVAE ALMNVLEQKV SVSGEPMQRL SAYMLEGLRA RLFSSGSIIY KKLKCNEPTS  240
SELISYMQVL YHICPYYKFA YTSANVVIDE AMRNENRIHI IDFQIAQGSQ WMFLMHNLAR  300
RPGGPPFVHI TGVDDSQSAH ARGGGLHLVG ERLSKFAESC GVPFEFHAAG ISGCEVQLEN  360
IHIRHGEALA VNFPYVLHHM PDESVTTVNH RDRLLRLVKS LSPKIVTLVE QESNTNTSAF  420
LPRFRETMDY YTAMFESIDA ARPRDDKQRI SAEEHCVARD VVNIIACEGA DRVERHELFG  480
KWSMRLMMAG FTQCPLSPSV GEAITGVLKD FSPNYRLAES KGALYLGWKN RALATSSAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0GRAS family protein