PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU18392.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

bHLH

Protein Properties

Length: 404aa MW: 45575.2 Da PI: 4.9284

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU18392.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.8e-12	180	231	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ PHU18392.1 180 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 231 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MDKGENSQAN SLPTSFQMVI GETSSNTNNQ MVDYMLNPHS IQQQQQQQNQ SLLGFLPSNS 60 SLDKLSFADV MQFADFGPKL ALNQTKVVSE EDAGGIDPVY FLKFPVLNEK NVHEDDGDDD 120 DDQEGLMVQQ SDQEKFKLVV DQEGGKEKSE NVIVVERGHE GKNNKRKRPR IKTNEEVESQ 180 RMTHIAVERN RRKQMNEHLR VLRSLMPGSY VQRGDQASII GGAIEFVREL EQLLQCLESQ 240 KRRRIYGDNS TPPTRPLGDS SNIQPPQPQP QPMPINQNPS STHNHQPPLL LPLPNEYIEA 300 GIQEEIAESK SCLADVEVKL LGFDAMIKIL SRRRPGQLIK AIASLEDMQL SILHTNITTI 360 EQTVLYTFNV KISGETRYTA NDIANSIQQL FSFIHAEIAP YDIN

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MDKGENSQAN SLPTSFQMVI GETSSNTNNQ MVDYMLNPHS IQQQQQQQNQ SLLGFLPSNS  60
SLDKLSFADV MQFADFGPKL ALNQTKVVSE EDAGGIDPVY FLKFPVLNEK NVHEDDGDDD  120
DDQEGLMVQQ SDQEKFKLVV DQEGGKEKSE NVIVVERGHE GKNNKRKRPR IKTNEEVESQ  180
RMTHIAVERN RRKQMNEHLR VLRSLMPGSY VQRGDQASII GGAIEFVREL EQLLQCLESQ  240
KRRRIYGDNS TPPTRPLGDS SNIQPPQPQP QPMPINQNPS STHNHQPPLL LPLPNEYIEA  300
GIQEEIAESK SCLADVEVKL LGFDAMIKIL SRRRPGQLIK AIASLEDMQL SILHTNITTI  360
EQTVLYTFNV KISGETRYTA NDIANSIQQL FSFIHAEIAP YDIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	181	192	RMTHIAVERNRR
2	241	245	KRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-110	bHLH family protein