PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU18241.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 197aa    MW: 22691.1 Da    PI: 8.9087
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU18241.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.41.8e-131758949
                HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS
      SRF-TF  9 rqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49
                ++ t+ kR + + KKA+ELS+LCd+ev +i fs+  + ++ +
  PHU18241.1 17 KKATLEKRFQSLCKKAKELSILCDTEVGIIAFSHAeNDIFAW 58
                5789*****************************851455555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MTKKGVRTTR NLDSKIKKAT LEKRFQSLCK KAKELSILCD TEVGIIAFSH AENDIFAWPS  60
VIQAIDQVKN YLACVETKKP VKFQKHETYL QSILDAQEKY IDQMEQKVEK MEMENLFREL  120
VNARKRFDEL EDREIKEASL NLLGVTEEAD GPSEKRRTLT QTIAMRQKTD SLAKCDGEGR  180
RTVGLAMDHR TPPSQLR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06500.12e-15M-type_MADS family protein