PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU17975.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | ARF | ||||||||
Protein Properties | Length: 1095aa MW: 120918 Da PI: 6.3348 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 62 | 9.4e-20 | 135 | 236 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ + W++++ yr++++r++lt+GW+ v+ ++L +gD+v+F +d++++f + PHU17975.1 135 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySLQPPA-QELVARDLHDNIWTFRHVYRGQPKRHLLTTGWSLVVSGKRLFAGDSVLFIRDEKHQF--L 230 99*****************************9777766.49************************************************6554555..9 PP EEEE-S CS B3 94 vkvfrk 99 ++++++ PHU17975.1 231 LGIRKA 236 998875 PP | |||||||
2 | Auxin_resp | 118.5 | 5.5e-39 | 261 | 344 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPra++seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ PHU17975.1 261 AAHAAANNSPFTVFYNPRAGPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 344 79*******************************99879********************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 1095 aa Download sequence |
MKMPANGAGA QVASAYAANP SEGEKKTINP ELWQACAGPL VNLPVAGTHV VYFPQGHSEQ 60 VAASIKKDVE AQIPNYPNLP SKLICLLHNV TLHADPETDE VYAQMTLQPV PSFDKEALLR 120 SDLSMKANKP QPEFFCKTLT ASDTSTHGGF SVPRRAAEKI FPPLDYSLQP PAQELVARDL 180 HDNIWTFRHV YRGQPKRHLL TTGWSLVVSG KRLFAGDSVL FIRDEKHQFL LGIRKANRQP 240 TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAG PSEFVIPLAK YYKATYSSQV 300 SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERINRVS 360 IWEIEPITAP FLICSSPFFS SKRPRQPGMP DGDYSDIDGM FKRTMPFLGD DFGTTDPQGL 420 PGFSLIQWMN MQKNFSPANP MLPNYLNSLP GSALQNLAGA DLSHQLGLAA PQFQQKHNLQ 480 FNTHRTNQQG QQLDQLQKLP AATLNPLDSI MQSQQQLSDV SQQPGQNLTN QSLPTTQVHT 540 QHPQGQNIVQ SQNVLPSQQS IQNQLQRNLP QSLPQQQILS QTQQQSFMTS QTQDPVNQQQ 600 HFSDNQAQIQ LLQKLHQQQK SLLAQQSALQ QPSQLGPIQD HQKQLLDVSQ NFSRSPVTNQ 660 MLDASQTMPT SLSHSQVVQQ QMTRINSPSN LRFSQPTQQL KLQQQQSGNL SDLSGPVNYS 720 VPRTTYQLPT NGSNLTITAR GGQSVVTDDV VPSCSTSVST NNCYNVVQPN MNGRITGARD 780 ETTHCSGPLE VLSANINLQQ KSDVKPSVNV VSKSQNHGFV APQTLNTSGL QFDYLDCSSS 840 ATSACLSQND VQLQQTTTDP LSCSSQPVIF RDSPDGGEVQ GDPRNNVAFG AANMENNQLG 900 LPMIPDPLIT KSSVGSRKDF SDNLSSGGGM LSSYENPKEA QPELLASMAS EYITFNSMDS 960 TINDGNFMDR GAWEPPPQLP RLRTYTKVYK RGAVGRSIDI ARYSGYEELK LDLARRFGIE 1020 GQLEDRQRIG WKLVYVDHEN DVLLVGDDPW EEFVSCVRCI KILSPQEVQQ MSLDGDFGGS 1080 VLQNQDCSSS DAGDV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | ARF family protein |