PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU17960.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 557aa    MW: 62825.1 Da    PI: 6.8258
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU17960.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS208.73.2e-641815312345
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 ++lL  cA a+++g+l+++q+l   l+el+s +gd+++Rlaa  ++AL + l+   s+s ++++   ++ +++n +   ++l  f+++sP++++ + +a
  PHU17960.1 181 EQLLNPCAAAITAGNLNRVQHLFYVLQELSSLNGDANHRLAARGLQALTHYLSTpcSTSLISASAGITTFTSTNPKFFKNSLINFNDISPWFRIPNSIA 279
                 689**************************************************9755556667778888888888888888888*************** PP

        GRAS  99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvak 184
                 N+ Il+ + ++   + +Hi+D+++s+G+QWp+Ll++L+ Rp ++pp +R+T++ +  ++               +   +L  fA+e+++++++n l   
  PHU17960.1 280 NSSILQILLKHdssRNLHILDIGVSHGVQWPTLLEELTHRPgGPPPLVRLTVITPTMENdqqrhnpfvVGPGGYNFTVQLLAFAKEININLQINRLENY 378
                 ******99877666899************************55566*******99766667777777766667788899****************9888 PP

        GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfdsleaklp.res 279
                  l++l+ + ++ +p+E l+++ +++lh+l    ++ ++er+e+L+ +ksl+Pk +v++e+++d+  ns ++F+++f + +ey ++++ds+++ +  res
  PHU17960.1 379 PLQNLDSQLINSSPDEILVICAQFRLHNLK---HQNPDERTELLRKLKSLEPKGLVLSENNMDCscNScSDFATGFGRRVEYLWKFLDSTSVAYKgRES 474
                 *****************************8...66666778********************8875454369*******************887640344 PP

        GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                 e r++     ++ e+ +++++ g++    +e++ekW er++++GF    ++ ++ + a++ll+k++
  PHU17960.1 475 ERRRM-----MEGEAAKALTNMGEM----NERKEKWCERMRTVGFAWEMFGANVIDRARALLKKIQ 531
                 44444.....555699999999998....78888****************************9875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    
MIKHQHQAIL SHYPSSSICN TMTIDEPEPD PTFDPISEWL ADPLSYIPSF LDEPYGLDHF  60
YEESWWSPSE SLNQEMHINN NNSLTSFDTS LIVTHTSATP LEPIIASHLP PLDSPRKRKG  120
NDSDYNFEAS RKNQNPRIYD TDDGEAIVVQ RVTTRKTAGH KKATHKSTGN NGNNREGRWA  180
EQLLNPCAAA ITAGNLNRVQ HLFYVLQELS SLNGDANHRL AARGLQALTH YLSTPCSTSL  240
ISASAGITTF TSTNPKFFKN SLINFNDISP WFRIPNSIAN SSILQILLKH DSSRNLHILD  300
IGVSHGVQWP TLLEELTHRP GGPPPLVRLT VITPTMENDQ QRHNPFVVGP GGYNFTVQLL  360
AFAKEININL QINRLENYPL QNLDSQLINS SPDEILVICA QFRLHNLKHQ NPDERTELLR  420
KLKSLEPKGL VLSENNMDCS CNSCSDFATG FGRRVEYLWK FLDSTSVAYK GRESERRRMM  480
EGEAAKALTN MGEMNERKEK WCERMRTVGF AWEMFGANVI DRARALLKKI QLLLDLPPVS  540
PLLPSIPVPK INTNEIM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-123GRAS family protein