PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU17795.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 175aa MW: 20183.3 Da PI: 9.1079 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 37.7 | 2.7e-12 | 15 | 55 | 1 | 41 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 k+i++k+ s+ ++++ KKA+ELS+LC++++a+iifs PHU17795.1 15 KFIKDKRVEGARISNMQKTLCKKANELSILCGIKIAIIIFS 55 6788888888889999************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence |
MERKSYQIRK NVEIKFIKDK RVEGARISNM QKTLCKKANE LSILCGIKIA IIIFSVGSQP 60 FLFGNPDVES VVHQFLEAKQ STTSAFSVKK KKKVEENKAQ EKFGKGNVTH HLSEDFELID 120 SKRLEKFNLE IEKLEDHLNK EIDLLNYVIH SEDPNFELKM NVTSSLTLLT NWLSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 3e-12 | M-type_MADS family protein |