PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU17692.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 548aa    MW: 62134.8 Da    PI: 6.898
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU17692.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS209.71.6e-641815392352
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 ++lL  cA a+++g+l+++q+l   l+el+s +gd+++Rlaa  ++AL + l+   s+s ++++   ++ +++n +   ++l  f+++sP++++ + +a
  PHU17692.1 181 EQLLNPCAAAITAGNLNRVQHLFYVLQELSSLNGDANHRLAARGLQALTHYLSTpcSTSLISASAGITTFTSTNPKFFKNSLINFNDISPWFRIPNSIA 279
                 689**************************************************9755556667778888888888888888888*************** PP

        GRAS  99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg.........skeeleetgerLakfAeelgvpfefnvlvak 184
                 N+ Il+ + ++   + +Hi+D+++s+G+QWp+Ll++L+ Rp ++pp +R+T++ +  ++               + + +L  fA+e+++++++n l   
  PHU17692.1 280 NSSILQILLKHdssRNLHILDIGVSHGVQWPTLLEELTHRPgGPPPLVRLTVITPTMENdqqrhnpfvVGPGGYNFAVQLLAFAKEININLQINRLENY 378
                 ******99877666899************************55566*******997666677777777667788999******************9888 PP

        GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..ns.esFlerflealeyysalfdsleakl.pres 279
                  l++l+ + ++ +p+E l+++ +++lh+l    ++ ++er+e+L+++ksl+Pk +v++e+++d+  ns ++F+++f + +ey ++++ds+++ + +res
  PHU17692.1 379 PLQNLDSQLINSSPDEILVICAQFRLHNLK---HQNPDERTELLRILKSLEPKGLVLSENNMDCscNScSDFATGFGRRVEYLWKFLDSTSVAYkGRES 474
                 *****************************8...66666778********************8875454369*******************777514555 PP

        GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve 352
                 e r+++E e     + +++++  ++    +e++ekW er++++GF    ++ ++ + a++ll+k++ ++++rv+
  PHU17692.1 475 ERRRMMEGE-----AAKALTNMREM----NERKEKWCERVRTVGFAWEMFGANVIDRARALLKKYDnNWEMRVD 539
                 555555555.....66666665555....78888*******************************976667665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    
MIKHQHQAIL SHYPSSSICN TMTIDEPEPD PTFDPISEWL ADPLSYIPSF LNEPYSLDDF  60
YEESWWSPSE SINQEMHINN NNSLTSFDTS LIVTHTSATP LEPIIASHLP PLDSPRKRKG  120
NDSDYNFEAS RKNQNPRIYD TDDGEAIVVQ RVTTRKTAGH KKATHKSTGN NGNNREGRWA  180
EQLLNPCAAA ITAGNLNRVQ HLFYVLQELS SLNGDANHRL AARGLQALTH YLSTPCSTSL  240
ISASAGITTF TSTNPKFFKN SLINFNDISP WFRIPNSIAN SSILQILLKH DSSRNLHILD  300
IGVSHGVQWP TLLEELTHRP GGPPPLVRLT VITPTMENDQ QRHNPFVVGP GGYNFAVQLL  360
AFAKEININL QINRLENYPL QNLDSQLINS SPDEILVICA QFRLHNLKHQ NPDERTELLR  420
ILKSLEPKGL VLSENNMDCS CNSCSDFATG FGRRVEYLWK FLDSTSVAYK GRESERRRMM  480
EGEAAKALTN MREMNERKEK WCERVRTVGF AWEMFGANVI DRARALLKKY DNNWEMRVDX  540
GIRNGIKF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-131GRAS family protein