PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU17669.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

AP2

Protein Properties

Length: 513aa MW: 57016.6 Da PI: 6.6084

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU17669.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	30.5	8.9e-10	233	289	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ g rk + g ++ +++Aa+ ++ a++k++g PHU17669.1 233 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqARKGRQ-GGYDKEDKAARSYDLAALKYWG 289 57*****************88885555446666.7799999***********98 PP
2	AP2	50.2	6.6e-16	332	383	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g PHU17669.1 332 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 383 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MAPESNANWL SFSLSSMEML NNSSSSVHHE SSMLQSNDPS SSAADNHQYY FADNLFPHGW 60 MNPKSHQVMY SENEKQFFHQ GLFLDNNPQI IQHHQQPPPK LEDFFGGESD TSPTQDSSSL 120 THIYHHHNHG GTMATCDGGY FNNGQQDVNV TTAVAVVGGF QSFPTNSDSE VDDPQVMGTE 180 SSNELGYTAS INGGLSLGVN NTNCTNSLDT AIVTAVNSES CKKITDTFGQ RTSIYRGVTR 240 HRWTGRYEAH LWDNSCKREG QARKGRQGGY DKEDKAARSY DLAALKYWGA TATTNFPASN 300 YTKEIEEMKH MTKQEFIASL RRKSSGFSRG ASIYRGVTRH HQQGRWQARI GRVAGNKDLY 360 LGTFATEEEA AEAYDIAAIK FRGLNAVTNF EMNRYDVEAI MKSSLPIGGA AKRLKISLES 420 EQKPSLNDNY QQTPHNNVNN NHSINFGAIS PVSAIPCGLP GLPFDTNQPF YHHSFFPHLQ 480 YSRNDVGASD HTSGTMPLLP SPAEIFIWPH QSY

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MAPESNANWL SFSLSSMEML NNSSSSVHHE SSMLQSNDPS SSAADNHQYY FADNLFPHGW  60
MNPKSHQVMY SENEKQFFHQ GLFLDNNPQI IQHHQQPPPK LEDFFGGESD TSPTQDSSSL  120
THIYHHHNHG GTMATCDGGY FNNGQQDVNV TTAVAVVGGF QSFPTNSDSE VDDPQVMGTE  180
SSNELGYTAS INGGLSLGVN NTNCTNSLDT AIVTAVNSES CKKITDTFGQ RTSIYRGVTR  240
HRWTGRYEAH LWDNSCKREG QARKGRQGGY DKEDKAARSY DLAALKYWGA TATTNFPASN  300
YTKEIEEMKH MTKQEFIASL RRKSSGFSRG ASIYRGVTRH HQQGRWQARI GRVAGNKDLY  360
LGTFATEEEA AEAYDIAAIK FRGLNAVTNF EMNRYDVEAI MKSSLPIGGA AKRLKISLES  420
EQKPSLNDNY QQTPHNNVNN NHSINFGAIS PVSAIPCGLP GLPFDTNQPF YHHSFFPHLQ  480
YSRNDVGASD HTSGTMPLLP SPAEIFIWPH QSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	1e-142	AP2 family protein