PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU17577.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

CO-like

Protein Properties

Length: 426aa MW: 46838.1 Da PI: 4.8517

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU17577.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.5	2e-06	3	47	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C++++ ++ +C+ ++ lC +C + H+ H+++p+ PHU17577.1 3 PVCELCGVARAVVYCKPDSARLCLSCDGYVHSAnplsrrHSRSPI 47 79****99*******************66788888988776 PP
2	zf-B_box	25.4	3e-08	44	87	2	41
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.....Htvvp 41 + ++C++++++++ C d ++lCe C +H g H++++ PHU17577.1 44 RSPICDKCNSQPALVRCMDEAVCLCEGCDWDGH-GcigtgHRLQK 87 6799*****************************.77888899877 PP
3	CCT	62.9	1e-21	370	413	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a++RY+eK+ktR F K+irY+sRKa+A++R RvKGrFvk+ PHU17577.1 370 RHEAKMRYNEKKKTRTFGKQIRYASRKARADTRRRVKGRFVKAG 413 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MDPVCELCGV ARAVVYCKPD SARLCLSCDG YVHSANPLSR RHSRSPICDK CNSQPALVRC 60 MDEAVCLCEG CDWDGHGCIG TGHRLQKLNP YTGCPSPDEF TRMFSLVLET SIGNDTSFGS 120 FGTRPRSSLC INENNSSLES KGNDDSLVAS KLNEFASNYK FESWVIPPDP NYMTSYNKDP 180 APFSEGSGLP KQDCPIKDLG LEEGDDLSEG VDFDDVTLNF DCGYEILGSS QQSHPRYSNE 240 DKELDCLVME KNSSVTGSNN VETSHEATSS VQQEYMGLQS SQMAAAASST NLLQTMNATA 300 NCVLMNPTCN GSIGALPYLP APIHPSMSLS LSNITGESSV TTEYQDCGLS PGFLNEAPWD 360 LSLENCPQKR HEAKMRYNEK KKTRTFGKQI RYASRKARAD TRRRVKGRFV KAGEAYDYDP 420 SETRDF

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MDPVCELCGV ARAVVYCKPD SARLCLSCDG YVHSANPLSR RHSRSPICDK CNSQPALVRC  60
MDEAVCLCEG CDWDGHGCIG TGHRLQKLNP YTGCPSPDEF TRMFSLVLET SIGNDTSFGS  120
FGTRPRSSLC INENNSSLES KGNDDSLVAS KLNEFASNYK FESWVIPPDP NYMTSYNKDP  180
APFSEGSGLP KQDCPIKDLG LEEGDDLSEG VDFDDVTLNF DCGYEILGSS QQSHPRYSNE  240
DKELDCLVME KNSSVTGSNN VETSHEATSS VQQEYMGLQS SQMAAAASST NLLQTMNATA  300
NCVLMNPTCN GSIGALPYLP APIHPSMSLS LSNITGESSV TTEYQDCGLS PGFLNEAPWD  360
LSLENCPQKR HEAKMRYNEK KKTRTFGKQI RYASRKARAD TRRRVKGRFV KAGEAYDYDP  420
SETRDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	1e-101	CO-like family protein