PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU17068.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family M-type_MADS
Protein Properties Length: 412aa    MW: 46723 Da    PI: 8.6693
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU17068.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-18950142
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                k+ien+  r vtf+kRr+g+ KKA+EL + Cda+va i++ss
  PHU17068.1  9 KKIENSQYRDVTFTKRRQGLVKKANELAIFCDAQVATIVYSS 50
                68**************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    
MVRRKIEMKK IENSQYRDVT FTKRRQGLVK KANELAIFCD AQVATIVYSS LTTNSEPTGY  60
GYIVRSVGVD SSGRTLTAHL QLIKRSSVFG PDIQNLSLTA SFETKDRLRV RITDADHKRW  120
EVPQEFIPRE THSPPRSSLL GKRSSTSLPS SEDTHYFHTN TISDLSFTLH NTTPFGFTIT  180
RRSSGDVLFD TSPKNDSPDT FLICKDHYLQ LSSSLPANRS SIYGLGEHTK RTLKLKHNQT  240
LTLWNADIRS SNVDVNFNGM DIVYTGDRIT YKVVGGVIDL YFFAGPVPEL VMEQYTELIG  300
HPAPMPYWSF GFHQCRWGYK DITEVRNVVA GYAKAQIPLE VMWTDIDYMD GYKDFTLDPV  360
NYPLDQMKKL VDALHHNGQK FVLILDPSEF RHIQLLASLA SGRLPTSHSL GV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.24e-16MIKC_MADS family protein