PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU17063.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

M-type_MADS

Protein Properties

Length: 925aa MW: 103843 Da PI: 5.0229

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU17063.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	48.9	8.5e-16	2	43	1	42
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 k+ien+ r vtf+k r+g KKA+EL +LCda+va i++ss PHU17063.1 2 KKIENSQYRDVTFTKSRQGSVKKANELAILCDAQVATIVYSS 43 68**************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 925 aa Download sequence
MKKIENSQYR DVTFTKSRQG SVKKANELAI LCDAQVATIV YSSLTTNSEP TGYGYIVRSV 60 GVDSSGGTLT AHLQLIKSSS VFGPDIQNLS LNARSLSVRI TDADHKRWEV PQEFIPCETH 120 SSPRSSLLGK RSSTSLPSSE DTHYFQTNTI SDLSVTLPNT TPFVTLPNTT PFGFTIMRRS 180 SGDVLFDTSP KNDSPDTLLI FKDQYLQLSS SLPANRSSIY GLGDHTKRTF KLKHDQTSTL 240 WNSDIRSSNV DVNLYGSHPF YMDVRSHPGL GTNHGVLLFN SNGMDIVYTG DRITYKVVGG 300 VIDLYFFDGP VPELVMEQYT ELIGRPAPMP YWSFGFHQCR WGYKDITEVR NVVAGYAKTQ 360 IPLEMKKLVD ALHHNGQKFV LILDPGISIN SSYETYKRGM QADVFIKRDG VPYFGEVWPG 420 KVYYPDFINP RGRIFWSNEI KIFQDLLHVD GLWLDMNELS HFISSPPTPF STLDNPPYKI 480 NNNGVPATSH FGNALEYNVH NLYAFLEAKT TNAAFIDITG KRPFILSRST FVGAGKYTAH 540 WTGDNAVTWD DLAYSIPGIL SSGLFGIPMV GADICGFARN TTEELCRRWI QLGAFYPFAR 600 DHSEKFTIHQ ELYICDSVAA TAKKVLGLRY QLLPYFYTLM YEAHTKGIPI ARPLFFSFPE 660 DTNSYTIDSH FLIGKGLMVS PVLTSGAVSV NTYFPSGTWF IMFNYSNYIN MKSGSYISLD 720 APPDHINVHL QEGNIVAMQG EAMTTRAARE TPFELLVTIN SRYILDVLSF VGVVVGVRGF 780 VGVGIKKNEN VARDNEEDIE RASVERSTDL EEEDENKIEE EDRDGKDGDD EESDKGGKEE 840 EDEKKTEKGD DVESGENAEE KNEREDEEEG ADDNVDDDIE ALLINCERRS KVQYNLIKTF 900 SIDKFQLKKS IHNPTDLIIL LLNQS

Sequence ? help Back to Top

Protein Sequence Length: 925 aa Download sequence

MKKIENSQYR DVTFTKSRQG SVKKANELAI LCDAQVATIV YSSLTTNSEP TGYGYIVRSV  60
GVDSSGGTLT AHLQLIKSSS VFGPDIQNLS LNARSLSVRI TDADHKRWEV PQEFIPCETH  120
SSPRSSLLGK RSSTSLPSSE DTHYFQTNTI SDLSVTLPNT TPFVTLPNTT PFGFTIMRRS  180
SGDVLFDTSP KNDSPDTLLI FKDQYLQLSS SLPANRSSIY GLGDHTKRTF KLKHDQTSTL  240
WNSDIRSSNV DVNLYGSHPF YMDVRSHPGL GTNHGVLLFN SNGMDIVYTG DRITYKVVGG  300
VIDLYFFDGP VPELVMEQYT ELIGRPAPMP YWSFGFHQCR WGYKDITEVR NVVAGYAKTQ  360
IPLEMKKLVD ALHHNGQKFV LILDPGISIN SSYETYKRGM QADVFIKRDG VPYFGEVWPG  420
KVYYPDFINP RGRIFWSNEI KIFQDLLHVD GLWLDMNELS HFISSPPTPF STLDNPPYKI  480
NNNGVPATSH FGNALEYNVH NLYAFLEAKT TNAAFIDITG KRPFILSRST FVGAGKYTAH  540
WTGDNAVTWD DLAYSIPGIL SSGLFGIPMV GADICGFARN TTEELCRRWI QLGAFYPFAR  600
DHSEKFTIHQ ELYICDSVAA TAKKVLGLRY QLLPYFYTLM YEAHTKGIPI ARPLFFSFPE  660
DTNSYTIDSH FLIGKGLMVS PVLTSGAVSV NTYFPSGTWF IMFNYSNYIN MKSGSYISLD  720
APPDHINVHL QEGNIVAMQG EAMTTRAARE TPFELLVTIN SRYILDVLSF VGVVVGVRGF  780
VGVGIKKNEN VARDNEEDIE RASVERSTDL EEEDENKIEE EDRDGKDGDD EESDKGGKEE  840
EDEKKTEKGD DVESGENAEE KNEREDEEEG ADDNVDDDIE ALLINCERRS KVQYNLIKTF  900
SIDKFQLKKS IHNPTDLIIL LLNQS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51870.2	6e-11	MIKC_MADS family protein