PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU16961.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 742aa    MW: 83326.8 Da    PI: 6.2237
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU16961.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS388.67e-1193707402374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++ L+ cA+av+++d + a+++L+++++++sp+gd mqRla+yf+ +L+ar+a+s++++y al + +ts    ++ l+a++l+  ++P+ k+s++  N+
  PHU16961.1 370 RTILTLCAQAVAADDRRTANEFLKQIRQNSSPTGDGMQRLAHYFAHGLEARMAGSGTQIYTALISMPTS---AADILKAYQLYLAACPFRKLSNFFSNK 465
                 67899**********************************************************999998...9************************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 +I++a+e++++vHiiD++i++G+QWp+++q L+ Rp+gpp+lRiTg++ p++g   +e++eetg+rLa++Ae+++vpfef + +a+++e++++e+L+++
  PHU16961.1 466 TIMNAAETASTVHIIDYGIMYGFQWPCFIQRLSRRPGGPPKLRITGIDFPNPGfrPAERVEETGKRLADYAESFNVPFEFIA-IAQKWETIKVEDLKIQ 563
                 ****************************************************9*****************************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 +gE+l+Vn++ +  ++ldesv ++s+rd vL+++++l+P+v v    +  +n++ F +rf eal +ys++fd+lea++pre  er  vE+ ++gre++n
  PHU16961.1 564 KGEVLVVNCMNRFRNVLDESVVINSPRDIVLNFIRKLNPDVYVQGIVNGAYNAPFFITRFREALFHYSSIFDMLEANIPREIPERLLVEKLIFGREAMN 662
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 v+ace aer+er et+++W+ r ++aGFk++pl+e++   ak  ++ ++ + + ++ + ++l++gWk+r L+++S W+
  PHU16961.1 663 VIACESAERIERPETYKQWQVRNTRAGFKQLPLNEEILRIAKDRVKAYHHKDFIIDVDGHWLLQGWKGRILFTASTWT 740
                 *************************************************888*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 742 aa     Download sequence    
MVMDSRNYMG LYDTTSAIQL KDDGNSFFQD LNLMNNLRVS DALVERNRVA VPQFQPDLKP  60
DDVVPSAIDN SHEDYDFSDA VLKYISQMLM EENIEEKACM FQESAALQAA ERSFYEVIGE  120
KYPPSPNEKI LDLGQDVGHC VLDSSSNYYS CGSDVTDGLL CPNWNPDPGD TDSSHNQQFP  180
VDSAFASTSQ SSHSSSSSSG TVTDAHVDSP VSSIHIPDIF SDSESIMQFK KGVEEASKFL  240
PTGNSLLLDV RYNVVVKEDN ENGKDAVENR GKQKSPEGSR RKKNYHHDDF DVMEKRSNKQ  300
SAVSSESPVR SDLFDKVLLC SGGKNESALR ESWQTLSSKH APEDSLPKGS NGRKSRGKKP  360
GGKRGAVDLR TILTLCAQAV AADDRRTANE FLKQIRQNSS PTGDGMQRLA HYFAHGLEAR  420
MAGSGTQIYT ALISMPTSAA DILKAYQLYL AACPFRKLSN FFSNKTIMNA AETASTVHII  480
DYGIMYGFQW PCFIQRLSRR PGGPPKLRIT GIDFPNPGFR PAERVEETGK RLADYAESFN  540
VPFEFIAIAQ KWETIKVEDL KIQKGEVLVV NCMNRFRNVL DESVVINSPR DIVLNFIRKL  600
NPDVYVQGIV NGAYNAPFFI TRFREALFHY SSIFDMLEAN IPREIPERLL VEKLIFGREA  660
MNVIACESAE RIERPETYKQ WQVRNTRAGF KQLPLNEEIL RIAKDRVKAY HHKDFIIDVD  720
GHWLLQGWKG RILFTASTWT GA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1270283RGKQKSPEGSRRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein