PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU16830.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 544aa    MW: 60474.5 Da    PI: 6.3927
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU16830.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS401.21e-1221745441374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++ Aeav++ d + a+ lL+ l++++s +g+pmqRl ay++e+L+arl++s+s +yk+l+++e +   sse l+++ ++++++P++kf+++ aN
  PHU16830.1 174 LKDLLISSAEAVAEADVTTAEILLSVLEKRVSISGEPMQRLSAYMLEGLRARLLSSGSIIYKKLKCNEPT---SSELLSYMDVLYHICPYFKFAYMSAN 269
                 5789*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                   I ea+++e+r+H+iDf+i qG QW+ +++ La Rp+gpp lRiTgv++++s   +   l+ +gerLa +Ae++gvpfef+  +a +  +++le+L+v
  PHU16830.1 270 VVIGEAMKNESRIHVIDFQIAQGNQWVFFIHYLARRPGGPPYLRITGVDDSQSAhaRGGGLQLVGERLATIAESCGVPFEFHN-AALSGCQVKLEDLQV 367
                 **************************************************9988889999***********************.8999*********** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 ++gE+laVn+ ++lh+++desvs+ ++rd++L+lvkslsPk+v +veqe+++n+++Fl rf e+l+y+ a+f+s+++  pr+++ ri+ E+++++r++v
  PHU16830.1 368 RHGESLAVNFPFMLHHMPDESVSTMNHRDRLLRLVKSLSPKIVSLVEQEMNTNTAPFLLRFRETLDYHKAMFESVDVARPRDDKLRISAEEHCIARDVV 466
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n++acega+r+er+e ++kW++rl++aGF++ pls ++ + ++ +l++++s+ y++ e++g l+lgWk+r+L + SaW+
  PHU16830.1 467 NLIACEGADRVERQEPFGKWKSRLTMAGFTQCPLSPSVGEAINGMLNEYSSN-YSLAESQGVLYLGWKTRALATSSAWQ 544
                 **************************************************77.*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    
MQASQGPRRM GSAHELYHQP MQQVQQYYTP CRAFDKSIYN DSSSSGTQIS LKTQNEQFFI  60
MDSFPVTDCA INDAAPSVSV SSNRSPFSPQ CSPSCMSEPR RSFENACISS ASGCSGADDG  120
SGKKHVLREL NNKLLRPEYD IDDSCSCSFD DAVAKSSSLT WRNQVLDVAS RLDLKDLLIS  180
SAEAVAEADV TTAEILLSVL EKRVSISGEP MQRLSAYMLE GLRARLLSSG SIIYKKLKCN  240
EPTSSELLSY MDVLYHICPY FKFAYMSANV VIGEAMKNES RIHVIDFQIA QGNQWVFFIH  300
YLARRPGGPP YLRITGVDDS QSAHARGGGL QLVGERLATI AESCGVPFEF HNAALSGCQV  360
KLEDLQVRHG ESLAVNFPFM LHHMPDESVS TMNHRDRLLR LVKSLSPKIV SLVEQEMNTN  420
TAPFLLRFRE TLDYHKAMFE SVDVARPRDD KLRISAEEHC IARDVVNLIA CEGADRVERQ  480
EPFGKWKSRL TMAGFTQCPL SPSVGEAING MLNEYSSNYS LAESQGVLYL GWKTRALATS  540
SAWQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-178GRAS family protein