PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU16540.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 501aa MW: 55912 Da PI: 4.9674

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU16540.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.6	1.8e-12	168	189	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+++++tG Ck+G++CkF+H+ PHU16540.1 168 DCPYYMKTGMCKFGSNCKFNHP 189 7********************8 PP
2	zf-CCCH	32.4	1.5e-10	213	237	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + +C++++ +G CkyG CkF+H++ PHU16540.1 213 QIECKYYLTSGGCKYGKACKFIHSR 237 568********************95 PP
3	zf-CCCH	41.5	2.2e-13	257	282	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++rtG CkyG++C+F+H+ PHU16540.1 257 PGERECPYYMRTGSCKYGSNCRFHHP 282 5789*********************9 PP
4	zf-CCCH	28.5	2.6e-09	394	420	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f ++G Cky ++CkF+H++ PHU16540.1 394 PGQPECSYFIKFGDCKYRSNCKFHHPR 420 5789*********************96 PP
5	zf-CCCH	36.2	1e-11	442	466	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 + C+f++r+G+Ck+G+ CkF H++ PHU16540.1 442 QTVCSFYSRYGICKFGPACKFDHPE 466 678********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 501 aa Download sequence
MEEPIQQHQN QNQSEQLGLG LGLESRDSGT SSLPSDPNSQ NPNQNQPKSD DHDDDEMAMQ 60 VICEELQNLI LSRALDEEKG SEDRGESGRI EVENVEGNDD EGWGYEESGE FGYDQYDDEG 120 GDGNRSGNED DGGNENGYEG DLKEVGGFNG NRINTRKFTY PLRPDAQDCP YYMKTGMCKF 180 GSNCKFNHPS RGKFQGTKEK GKQREESQER PGQIECKYYL TSGGCKYGKA CKFIHSREKG 240 SISPIVEFNF LGLPLRPGER ECPYYMRTGS CKYGSNCRFH HPDPITVAGA DPSSGYNNAG 300 AFPVQASSHS AESSWSPPRS LNDTASYAPM VYPPSQGIPS PNTEWNGYQA PVYPTSEKRL 360 PTPPAFSMNN PTTKTNFYPR SQQPLLIEEY PERPGQPECS YFIKFGDCKY RSNCKFHHPR 420 SRISKANSST LNDKGLPLRP DQTVCSFYSR YGICKFGPAC KFDHPENYVG GSAPSAESGF 480 DQHQQSQMSL GWQGRQLEVD H

Sequence ? help Back to Top

Protein Sequence Length: 501 aa Download sequence

MEEPIQQHQN QNQSEQLGLG LGLESRDSGT SSLPSDPNSQ NPNQNQPKSD DHDDDEMAMQ  60
VICEELQNLI LSRALDEEKG SEDRGESGRI EVENVEGNDD EGWGYEESGE FGYDQYDDEG  120
GDGNRSGNED DGGNENGYEG DLKEVGGFNG NRINTRKFTY PLRPDAQDCP YYMKTGMCKF  180
GSNCKFNHPS RGKFQGTKEK GKQREESQER PGQIECKYYL TSGGCKYGKA CKFIHSREKG  240
SISPIVEFNF LGLPLRPGER ECPYYMRTGS CKYGSNCRFH HPDPITVAGA DPSSGYNNAG  300
AFPVQASSHS AESSWSPPRS LNDTASYAPM VYPPSQGIPS PNTEWNGYQA PVYPTSEKRL  360
PTPPAFSMNN PTTKTNFYPR SQQPLLIEEY PERPGQPECS YFIKFGDCKY RSNCKFHHPR  420
SRISKANSST LNDKGLPLRP DQTVCSFYSR YGICKFGPAC KFDHPENYVG GSAPSAESGF  480
DQHQQSQMSL GWQGRQLEVD H

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63260.1	1e-112	C3H family protein