PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU16264.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 693aa    MW: 76111.7 Da    PI: 5.6521
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU16264.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS278.32.3e-853326923374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 ++++++ e + +g++++aq +Larl+++ sp g+p +R+a+y++eAL+   +   + ++  lpp++ ++ + + ++ a+k+fse+sP+++f ++t Nqa
  PHU16264.1 332 DQIFQASELLLAGQFSNAQLILARLNQQLSPIGKPSRRAAFYIKEALQLPFLV--PCTSTFLPPRSPTPFDCVLKMDAYKAFSEISPLIQFMNFTSNQA 428
                 57899999999*************************************99998..666666899999999***************************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dleleeLrvkp 198
                 Ilea+  +e++HiiDfdi+ G+QW +++q+L s ++++  l+iT+++sp+++++ e+  ++e L++fA+  g++fe +v+  ++++  +  l++Lr ++
  PHU16264.1 429 ILEALGDAEQIHIIDFDIGFGAQWSSFMQELPSSSRKATYLKITAFASPSTHHSVEIAIMHESLTQFANDAGMRFELEVINLDSFDpkSYPLSSLRSSE 527
                 *******************************************************************************97776551155789999999 PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                  Ea+a+n+ +   + l  + + +s    +L+++++lsPkvvv  e  +++++ ++ +++l+al+yy +l+ s++a    + + ++k+Er ll+++i+n+
  PHU16264.1 528 CEAIAINFPIWSISSL--PFAFPS----LLHCMRQLSPKVVVSLECGCERTELPLKHHLLHALQYYETLLASIDAA-NLTPDIAKKIERSLLQPSIENM 619
                 *********9777766..566666....*********************************************655.34778999************** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +  + ++      ++  Wr+ +++aGF+p+++s+ ++ qa+++++++++ g++ve+++ slvl+Wk+++L+s+  Wr
  PHU16264.1 620 ILGRLRS----PDRMPPWRNLFTSAGFSPIAFSNMTEVQAECVVKRTQVGGFHVEKRQTSLVLCWKQQELLSAATWR 692
                 **99988....9999*************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    
MIVIPQGNSI PAKGVLCVSS FVPSITSSSS SSQEAPIFMK DANFTRNEPV SELDTRSPSP  60
SASSSSCSYG GNTAVQGVGS WKTDGKKEEL VMELQPLTVG SDPEKSVLGF GDLDNLLPEF  120
VGSDQSFLRW ISGDVEDPSV SLKQLLNGDF GSGFEVSGTG SLVHTDANLS FSGSNICLNA  180
NIERFGTVID SNNGRNNNSF EKNLNVNPYL EQKPQVMANQ NQFQNAVCVN ILGSSPCDIN  240
QEQPPSKRHN SGALVSSLGG LLPKVPFFDA SCDFLMRKQP LGQMQQQVNL LPAQQFQPKP  300
LIVPKLEAAG GGGNGNLMVP RHQLQEQQFI YDQIFQASEL LLAGQFSNAQ LILARLNQQL  360
SPIGKPSRRA AFYIKEALQL PFLVPCTSTF LPPRSPTPFD CVLKMDAYKA FSEISPLIQF  420
MNFTSNQAIL EALGDAEQIH IIDFDIGFGA QWSSFMQELP SSSRKATYLK ITAFASPSTH  480
HSVEIAIMHE SLTQFANDAG MRFELEVINL DSFDPKSYPL SSLRSSECEA IAINFPIWSI  540
SSLPFAFPSL LHCMRQLSPK VVVSLECGCE RTELPLKHHL LHALQYYETL LASIDAANLT  600
PDIAKKIERS LLQPSIENMI LGRLRSPDRM PPWRNLFTSA GFSPIAFSNM TEVQAECVVK  660
RTQVGGFHVE KRQTSLVLCW KQQELLSAAT WRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.17e-98GRAS family protein