PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU16254.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 667aa    MW: 75117.3 Da    PI: 6.7286
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU16254.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.66e-1082936632374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL++cAea ++ + +   ++L ++++++sp gd++ Rla yf++AL+ar a+ ++      +  ++++ + +e l+a++++  ++P+ ++s++ aN+
  PHU16254.1 293 TSLLTRCAEAAATYNSKTFIQVLDKIKQHSSPFGDATARLAYYFANALEARFAG-GD-----ATLATSKRISAAEFLKAYQIYIAACPFKRMSNIFANK 385
                 689***************************************************.22.....2223333345899************************ PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                  I + ++ + rvHiiDf+i +G+QWp++++ ++ Rp+gpp+lRiTg++ p++g   +e++eetg+ L++++++++vpfe+++ +ak++++++le+L+++
  PHU16254.1 386 SIAKLTSASPRVHIIDFGILYGFQWPCIIHGISLRPGGPPRLRITGIDFPQPGfrPAERVEETGRHLEEYCKRFNVPFEYKA-LAKKWDEIKLEDLDID 483
                 ****************************************************9*****************************.6*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                 ++E+l+Vn+ ++l++++de+v ++    +r++vL+l+k+++P+ +v+    a +n++ F +rf eal ++s+ fd++ea++pre+e r++ E++++gr+
  PHU16254.1 484 RDETLVVNCLYRLKNVHDETVVTHGnknPREAVLNLIKEINPHYFVHGIVSAMYNASFFTTRFREALFHFSSQFDMFEATMPREDEGRMTFEQQVFGRD 582
                 ******************99877655569********************************************************************** PP

        GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 i+nv+aceg+er+er e++++W+ r + aGF+++pl+++++k++k+ +++++   + v+e+s+++++gWk+r ++++S+W+
  PHU16254.1 583 IMNVIACEGTERVERPESYKQWSVRNQIAGFRQLPLDQDIVKEVKTKVKMFYHADFLVDEDSNWMLQGWKGRIMYALSVWE 663
                 ****************************************************888*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    
MNTSTHFPSD HRSSDRFEFC HRFALNNNLG IASDQFSRRG GGVGGGGGGI NDVFCFPRSM  60
PPSDEELVIG SGSDRTVVEG DYFDGVFKYI QQMLMEDQDD LENRPCMFPD CIALQAAEKS  120
FYDVLNPPPV HRDAVNQLVE STSNADLDGD QCSLLYASGL NNYHQAGAAN SGYVNSADAS  180
NYRQANEANG GVKSNKKHTR EENGDTSKGG NSKQFASNGA EETGDKEGEE HYDKALLCPG  240
MNPSFYENRS KTATSLDNAA WDKQKSSHIK LSKRGRPRGT KNGMKKNEVV DLTSLLTRCA  300
EAAATYNSKT FIQVLDKIKQ HSSPFGDATA RLAYYFANAL EARFAGGDAT LATSKRISAA  360
EFLKAYQIYI AACPFKRMSN IFANKSIAKL TSASPRVHII DFGILYGFQW PCIIHGISLR  420
PGGPPRLRIT GIDFPQPGFR PAERVEETGR HLEEYCKRFN VPFEYKALAK KWDEIKLEDL  480
DIDRDETLVV NCLYRLKNVH DETVVTHGNK NPREAVLNLI KEINPHYFVH GIVSAMYNAS  540
FFTTRFREAL FHFSSQFDMF EATMPREDEG RMTFEQQVFG RDIMNVIACE GTERVERPES  600
YKQWSVRNQI AGFRQLPLDQ DIVKEVKTKV KMFYHADFLV DEDSNWMLQG WKGRIMYALS  660
VWEPIHK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-160GRAS family protein