PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU16170.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB
Protein Properties Length: 306aa    MW: 34516.6 Da    PI: 9.7103
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU16170.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.23.3e-072468345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+ E + + +a +++ ++   +W ++a++++ g++  +++  + 
       PHU16170.1 24 KWTPAENKAFENALALFDKDtpdRWQRVAEMVP-GKSVGDVIRQYK 68
                     8********************************.***999988875 PP
2Myb_DNA-binding47.54.1e-15131175347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + k++G+g+W+ I+r +  +Rt+ q+ s+ qky
       PHU16170.1 131 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVVTRTPTQVASHAQKY 175
                      7*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MEILSPAPYL ANPSWFLDEG KSTKWTPAEN KAFENALALF DKDTPDRWQR VAEMVPGKSV  60
GDVIRQYKEL EDDVSRIEAG LITIPGYSTS PFTLEWGNSH SFDGYKQTYV VGGKRPLSSR  120
PPEQERKKGI PWTEEEHKLF LMGLKKYGKG DWRNISRNFV VTRTPTQVAS HAQKYFIRQL  180
SGGKDKRRAS IHDITTINLH DNQTSSPDYQ KPTSPDQPAV ISQQPKSAAN AVHKMPFQWN  240
QANNGTAMGF NSAQGSLFMS PLYGVNSYGN NKMQSQSLQR GALHEPYFGS QSMNFQLQSA  300
HQYHQA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-103MYB family protein