PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU16144.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 688aa MW: 74845.8 Da PI: 6.5587 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.5e-07 | 277 | 297 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ GtC++ d C +aHg PHU16144.1 277 PCPDFRK-GTCQRADACEYAHG 297 8******.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 688 aa Download sequence |
MCSGSGSRVC SADLAMEAKI QDQKELVPNF SLLLELSASD DIRNFQKAVE EEGHDINEVG 60 LWYVRKVGVK KMGYEERTPL MVAATFGSKQ VLNYILEKGC VDVNQTCGSD RATALHCAIV 120 GGSSALPEVV KLLLDASADA NLVDADGKRA VDLISSRGRC LNSRRKILEH LLGGNSGDEG 180 EGSGCIDQII SEQAEEQLLL TPTVSKFGSE KKEYPVDPSL PDIKNGIYGS DDFRMYIFKV 240 KPCSRAYSHD WTECPFVHPG ENARRRDPSK YHYSCVPCPD FRKGTCQRAD ACEYAHGIFE 300 CWLHPAQYRT RMCKDETNCN RRVCFFAHKP GELRPLYPST GSAVLSPRSY SNGTTSLDIS 360 SITPLALGSP SVMMPPTSTP PMSPSAGASS VGGSLWPGQS SHSTPTLQLP ISRLKTSINA 420 RHMELGNGYL RQDQLMDDLS ALSSPSRWNG SSAKAATFAT SFNDLNGELG RHGGLEPTNL 480 DDILATLDSK ILSQLQGLSL DAVSPHLQSP KGMQMRQNMN QQHMTSYSSG QSSPSFRTSS 540 SYGIDASIAA TTAALSSRSA AFAKRSQSFI DRSAVGRLSN ASAMPSNLSG WGSPDGKLDW 600 GIQKDELNKL RKSASFGLRN SGNRFPTNEG SVSDSSVESD VSWVQPLDSP ARQLAMEDQQ 660 YRLNASRGSE ATPTWVDQLY MEQEQIVH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58620.1 | 1e-168 | C3H family protein |