PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU16104.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 355aa    MW: 40740.6 Da    PI: 5.8652
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU16104.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS280.74.4e-86583547310
        GRAS   7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIlea 105
                  cA+av++ d++ a++ L+ ++ ++sp+g++++R+a+yf+ AL+arla+++ ely+a++ ++ +    ++ l+a+++++       +s++ a + I   
  PHU16104.1  58 YCAQAVANYDTRIAHEKLKLIRLHRSPYGEATERMAHYFADALEARLAGTGIELYAAFAKRTIT---AADILKAFQVYV-----TALSNIFAGESIGML 148
                 6*******************************************************99999998...899999999986.....579************ PP

        GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
                 + +++ +HiiDf+i +G+QWp+++q ++ Rp+gpp lRiTg++ p++g   +e++eetg+rLak++++++vpfe+n+ +ak++++++l++L++++ E+l
  PHU16104.1 149 TREATSIHIIDFGILYGFQWPCFIQGISLRPSGPPILRITGIDFPQPGfrPAERVEETGRRLAKYCRRFNVPFEYNA-IAKKWDSIQLNDLKINKSEML 246
                 ***********************************************9*****************************.7******************** PP

        GRAS 203 aVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                 +Vn+ ++l +++de++s +s+rd+vL+l+k+++P+v+ +   +  +ns+ F +rf eal +ys+lfd++ea++pre++er   E++ +g+ei+n+va e
  PHU16104.1 247 VVNCLYRLIHVPDETASENSPRDDVLRLIKQIKPDVFLHGIINGTYNSSFFETRFKEALFHYSSLFDMMEATVPRENQERLLFEKVNFGKEIMNIVAWE 345
                 *************************************************************************************************** PP

        GRAS 302 gaerrerhe 310
                 g++r+er e
  PHU16104.1 346 GTARVERPE 354
                 *******98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    
MESNNHSSLA CDYFDGVLNY INNMLIMEEE EDLENRSCML HDSLALQATE KSFYDALYCA  60
QAVANYDTRI AHEKLKLIRL HRSPYGEATE RMAHYFADAL EARLAGTGIE LYAAFAKRTI  120
TAADILKAFQ VYVTALSNIF AGESIGMLTR EATSIHIIDF GILYGFQWPC FIQGISLRPS  180
GPPILRITGI DFPQPGFRPA ERVEETGRRL AKYCRRFNVP FEYNAIAKKW DSIQLNDLKI  240
NKSEMLVVNC LYRLIHVPDE TASENSPRDD VLRLIKQIKP DVFLHGIING TYNSSFFETR  300
FKEALFHYSS LFDMMEATVP RENQERLLFE KVNFGKEIMN IVAWEGTARV ERPER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-120GRAS family protein