PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU16103.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 750aa    MW: 85028.6 Da    PI: 5.0106
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU16103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS349.65e-1073767471373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA+ v+++d +   + L+++++++sp gd+ qRla++f+ +++arla+++++ly+al+p++ +    +e+l+a+ ++  ++P+ k+s + aN
  PHU16103.1 376 LRTLLVSCAQSVAADDRRTPYEQLKQIRQHCSPVGDAYQRLASVFADGIEARLAGTGTQLYAALAPKKIT---AAEKLKAYGVYLSACPFKKISIFFAN 471
                 6789****************************************************************99...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 ++I   +++++++H iDf+i +G+QWp L+q L++ p+gpp+lRi g++ p++g   +e+le+tg+rLak++e+++vpfe+n+++ +++ed+++e+L++
  PHU16103.1 472 KMIFHTASNARTLHLIDFGILYGFQWPILIQLLSQMPDGPPKLRISGIDLPQPGfrPAESLEQTGSRLAKYCERFNVPFEYNAIAIQNWEDIKIEDLEL 570
                 *****************************************************9********************************************* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  +gE+laVn+ ++ ++llde+v l+s+rd+vL+l+++++P+++v +  + +++++ F++rf eal +ys+lfd+++a+lpr++++r   E+e+ +re++
  PHU16103.1 571 VSGETLAVNCLFRFENLLDETVVLDSPRDAVLSLIRKMNPDIFVQAVINGSYSAPFFVTRFREALFHYSTLFDMFDATLPRDDQQRLHFEQEFYRREAM 669
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 nv+aceg+er+ r et+++W+ r ++aGFk +pl+e+ +++ ++ ++  +   +  +e+ +++++gWk+r + + S+W
  PHU16103.1 670 NVIACEGSERVVRPETYKQWQVRNMRAGFKLLPLNEQLMQKLRCKVKAGYHSDFVFDEDGKWMLQGWKGRVVCASSCW 747
                 ***********************************************999777************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 750 aa     Download sequence    
MDPRFVPLPD PVYTFEFDDQ INLSSFEGSL NPPQSYYNDY VAFGVPYTAP SLDIGNFAPS  60
PNVSSEVDSP DDHDSDSLFK YLNQILMEEN IEDKPSMFHD PLALKAAEKS LYEALGKTYP  120
PSPYRTPYYV DHQLESPSPD SIFQTYSDHS TSSSNTHSNS TDPHWIVDPG KSRLPFGRSP  180
SEYSTQPLLQ SNSERSHVSL NNSTNLNVHM DSLLNPNVLS NVFTDSESML QFKRGMEEAN  240
KFLPNVSQFV IDLDKYTFPP KVEEVNKEAV VKAEKDERNH SPNDTKGRKH QYPEDSDYED  300
ERSNKQSAIY VEEEVELSEM FDRVLLCTDK GETICGDVKS EMAVDKSLDQ NGQAHGSMGG  360
KTRAKKQGTK TEAVDLRTLL VSCAQSVAAD DRRTPYEQLK QIRQHCSPVG DAYQRLASVF  420
ADGIEARLAG TGTQLYAALA PKKITAAEKL KAYGVYLSAC PFKKISIFFA NKMIFHTASN  480
ARTLHLIDFG ILYGFQWPIL IQLLSQMPDG PPKLRISGID LPQPGFRPAE SLEQTGSRLA  540
KYCERFNVPF EYNAIAIQNW EDIKIEDLEL VSGETLAVNC LFRFENLLDE TVVLDSPRDA  600
VLSLIRKMNP DIFVQAVING SYSAPFFVTR FREALFHYST LFDMFDATLP RDDQQRLHFE  660
QEFYRREAMN VIACEGSERV VRPETYKQWQ VRNMRAGFKL LPLNEQLMQK LRCKVKAGYH  720
SDFVFDEDGK WMLQGWKGRV VCASSCWVPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0GRAS family protein