PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU15965.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 414aa    MW: 45170.5 Da    PI: 9.6079
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU15965.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08225249226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 kt+lC+ +     Ck+G++C+F+Hg
  PHU15965.1 225 KTRLCSKYNTAEGCKFGEKCRFSHG 249
                 8***********************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    
MSSSDSSFWK EAVNSEIDSI LSNHTWELVD LPPGNKPLGS KWIFKRKMKA NGTIDKYKAR  60
LVVKGFKQKE GLDYFDTYSP VTRITSIRML IALAAVYNLQ IQQMNVKTAF LNGDLEEEIY  120
MEQPEGFVVP GKENKITIDY VKSKDNVSDP LTKGLSREGV ERTSKGMGLR PRTSQHGGCH  180
FLHYVPGGLK AVTQMLVSNP ALPATSRNLI APPSFPDGAS PPAVKTRLCS KYNTAEGCKF  240
GEKCRFSHGD WELGRPAAPL HEESHGMFQM HGRYGSRPET NPAGLGAAAS FGSSATAKIS  300
VDASLAGRII GKGGVNSKQI CRVTGAKLSI RDHELDPNLR NIELEGTIDQ LEQASRMVRE  360
LIQSVTTSVV PPKNTGSSAT KYPYIEHMSV SIMLSLSSVS APGQLRVGLS TERT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-32C3H family protein