PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU15853.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

ARF

Protein Properties

Length: 688aa MW: 76472.8 Da PI: 5.9574

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU15853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.7	9.2e-23	116	216	1	98
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g+ W +++i+r++++r++lt+GW+ Fv+ ++L +gD++vF +++++ l PHU15853.1 116 FAKTLTQSDANNGGGFSVPRYCAETIfptldlsADPPVQ--TVMAKDVHGEIWPFRHIFRGTPKRHLLTSGWSTFVNKKKLVAGDSIVFL--REESGAL 210 89**************************996555555..8********************************************..5589999 PP EEEEE- CS B3 93 vvkvfr 98 +v+++r PHU15853.1 211 CVGIRR 216 **98 PP
2	Auxin_resp	111.6	7.7e-37	281	361	4	83
Auxin_resp 4 aastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 ast+++Fe+vY+Prast+eF+v++++v++a++v++++GmRfkmafeted s++++ +G ++ v+ +dpvrWp+S+Wr+L+ PHU15853.1 281 FASTGQPFEIVYYPRASTPEFCVRASSVNAAMSVQWCLGMRFKMAFETEDLSRISWfMGSISTVQVADPVRWPHSPWRLLQ 361 689****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 688 aa Download sequence
MASEMEEVAE KCLDSELWHA CAGSMVQIPA VNSKIYYFPQ GHAEHTCTDV DFSALPRIPA 60 MILCRVDTVK FLADPKTDEI YAKIRLIPVL NNEHDFEDDT FFGSSVVETT EKPISFAKTL 120 TQSDANNGGG FSVPRYCAET IFPTLDLSAD PPVQTVMAKD VHGEIWPFRH IFRGTPKRHL 180 LTSGWSTFVN KKKLVAGDSI VFLREESGAL CVGIRRVKRG GIGGQETQSG WNLIAGNYGG 240 SYAYLKEDEK SSSNGNLNSS GGRFRDKGKV SPESVVRASY FASTGQPFEI VYYPRASTPE 300 FCVRASSVNA AMSVQWCLGM RFKMAFETED LSRISWFMGS ISTVQVADPV RWPHSPWRLL 360 QVTWDEPDLL QNVKHVNPWL VELVSNMPVI HLSPPRKRLC LPQECALDCQ FPLPSFSGNP 420 LGSSSPFGYQ PNNITAGIQG ARHAQFGDPL LDFQLSKKLQ LEVLPPVDAD SEIPNDISKV 480 QKESNEDLSS LLSMGISSQM LEKADDVKKP SFLLFGQPIL TEQQMSRVES TNAPPQVQTK 540 RDSSGEAQLK TEEISLGWKD FSECLSSASF LCNRGYHAAE LGAFIGHCKV FLDSEDIGRS 600 IDLSVLGSYA ELYKRLADMF ENERLDMMKI SVLYLDATGA SRQIGDEPFS DFIKTARRLT 660 VLRNPGNGTA RKWLSSTLSR YFKPDRIP

Sequence ? help Back to Top

Protein Sequence Length: 688 aa Download sequence

MASEMEEVAE KCLDSELWHA CAGSMVQIPA VNSKIYYFPQ GHAEHTCTDV DFSALPRIPA  60
MILCRVDTVK FLADPKTDEI YAKIRLIPVL NNEHDFEDDT FFGSSVVETT EKPISFAKTL  120
TQSDANNGGG FSVPRYCAET IFPTLDLSAD PPVQTVMAKD VHGEIWPFRH IFRGTPKRHL  180
LTSGWSTFVN KKKLVAGDSI VFLREESGAL CVGIRRVKRG GIGGQETQSG WNLIAGNYGG  240
SYAYLKEDEK SSSNGNLNSS GGRFRDKGKV SPESVVRASY FASTGQPFEI VYYPRASTPE  300
FCVRASSVNA AMSVQWCLGM RFKMAFETED LSRISWFMGS ISTVQVADPV RWPHSPWRLL  360
QVTWDEPDLL QNVKHVNPWL VELVSNMPVI HLSPPRKRLC LPQECALDCQ FPLPSFSGNP  420
LGSSSPFGYQ PNNITAGIQG ARHAQFGDPL LDFQLSKKLQ LEVLPPVDAD SEIPNDISKV  480
QKESNEDLSS LLSMGISSQM LEKADDVKKP SFLLFGQPIL TEQQMSRVES TNAPPQVQTK  540
RDSSGEAQLK TEEISLGWKD FSECLSSASF LCNRGYHAAE LGAFIGHCKV FLDSEDIGRS  600
IDLSVLGSYA ELYKRLADMF ENERLDMMKI SVLYLDATGA SRQIGDEPFS DFIKTARRLT  660
VLRNPGNGTA RKWLSSTLSR YFKPDRIP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein