PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU15638.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 356aa MW: 38783 Da PI: 7.0146 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 29.6 | 1.2e-09 | 105 | 129 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ G C+y +C+FaHg PHU15638.1 105 FKTKLCCKFRA-GVCPYVTNCNFAHG 129 69*********.*************8 PP | |||||||
2 | zf-CCCH | 21.1 | 5.6e-07 | 180 | 204 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k + C+ f+ C+yGd+C+F H+ PHU15638.1 180 KVRHCKKFYTEEGCPYGDSCTFLHD 204 6677********************7 PP | |||||||
3 | zf-CCCH | 41.5 | 2.1e-13 | 238 | 263 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G++C+FaHg PHU15638.1 238 WKTRICNKWETTGYCPFGGKCHFAHG 263 8************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence |
MDYTGDGGFA GGNVIPDSTA GSGGGFESWG PNFSDQAVWA TEDDYKAWNT GPFCETPSNS 60 SQDGGRHSQN RSGSDPPNKK SRNVQDSDAR VIVTSSSKAI GKMFFKTKLC CKFRAGVCPY 120 VTNCNFAHGI EELRKPPPNW QEIVAAHESE RGGMVEMREE HQIPILSSPD LRGESQRSSK 180 VRHCKKFYTE EGCPYGDSCT FLHDEQSRSR ESVAISVTPT VGGFGNNAAG ATQKPSNWKT 240 RICNKWETTG YCPFGGKCHF AHGAAELNKF GGPSEAEGKD YVSVPPDSKQ GGVPLRATES 300 TLPSIIPALH SDVYHLGQGV QVQRPTGIVE RPGQRLKWKG PDKISKIYGD WIDDLE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-113 | C3H family protein |