PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU15504.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 647aa MW: 72498.5 Da PI: 4.6111

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU15504.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39	1.3e-12	325	347	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG CkyG +CkF+H+ PHU15504.1 325 EDCAYYMKTGACKYGVNCKFNHP 347 89********************8 PP
2	zf-CCCH	21.6	3.7e-07	354	373	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +++ G CkyG+ Ck++H++ PHU15504.1 354 YYLTEGGCKYGNACKYNHSR 373 89****************95 PP
3	zf-CCCH	40.3	5.1e-13	394	418	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C++++rtG CkyG++C+F+H+ PHU15504.1 394 GEKDCPYYMRTGSCKYGSNCRFHHP 418 7889********************9 PP
4	zf-CCCH	27.3	6.2e-09	531	557	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C++f +tG Cky ++CkF+H++ PHU15504.1 531 PGQPDCSYFIKTGDCKYKANCKFHHPK 557 5789*********************96 PP
5	zf-CCCH	31.5	3.1e-10	577	603	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f++r+G+Ck+G+ CkF H++ PHU15504.1 577 PGQPVCSFYSRYGICKFGPGCKFDHPE 603 5789*********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 647 aa Download sequence
MEGIESQVYM QHQPTTLDKH YLGFHHPQPP DGTSSFSSEQ DLRSPEENEV DDELLLQIIV 60 EEVRDLVLNQ AVSEERSKSE AVAAKSVNQD EIAVQIINEE VRNLVLNQAV SEESNKAKPV 120 NEEEVAVQII NEELRKLVLN QSFSEERARE GDINESVKEV SENVKGGEVV SKEWGADQYE 180 DDEHSWRENV NVVDVGNEEG GEAGSKEWGV DDQYEDGDCS WREHENVVGV EDEKGSEAGS 240 KKWGVDHYED GDYSWSEDAN VIDVENEAGL KEWGFDCYED GDHSWRRNEN VVDVENEKDG 300 EAGSKLWGYN ANGRGLIYPL RPDAEDCAYY MKTGACKYGV NCKFNHPSPR RNQYYLTEGG 360 CKYGNACKYN HSRRKDAISP VLDYNFLGLP IRPGEKDCPY YMRTGSCKYG SNCRFHHPDP 420 TTAAGNNRSF GYNNSGSAPV QSASYSPVSS WSSPRALNET SPFLPVVYTT SKGIPPPGPQ 480 WNSFLTTVCP TLEKSLPTPP AFTMDDPATK PNFYPRPQQP WLVEEYYPER PGQPDCSYFI 540 KTGDCKYKAN CKFHHPKTQN FKTNLSILSN KGLPLRPGQP VCSFYSRYGI CKFGPGCKFD 600 HPENNDNVAS PPAFGFYQPP FGNSATTDGS RMARKGNGNG SLVHQSF

Sequence ? help Back to Top

Protein Sequence Length: 647 aa Download sequence

MEGIESQVYM QHQPTTLDKH YLGFHHPQPP DGTSSFSSEQ DLRSPEENEV DDELLLQIIV  60
EEVRDLVLNQ AVSEERSKSE AVAAKSVNQD EIAVQIINEE VRNLVLNQAV SEESNKAKPV  120
NEEEVAVQII NEELRKLVLN QSFSEERARE GDINESVKEV SENVKGGEVV SKEWGADQYE  180
DDEHSWRENV NVVDVGNEEG GEAGSKEWGV DDQYEDGDCS WREHENVVGV EDEKGSEAGS  240
KKWGVDHYED GDYSWSEDAN VIDVENEAGL KEWGFDCYED GDHSWRRNEN VVDVENEKDG  300
EAGSKLWGYN ANGRGLIYPL RPDAEDCAYY MKTGACKYGV NCKFNHPSPR RNQYYLTEGG  360
CKYGNACKYN HSRRKDAISP VLDYNFLGLP IRPGEKDCPY YMRTGSCKYG SNCRFHHPDP  420
TTAAGNNRSF GYNNSGSAPV QSASYSPVSS WSSPRALNET SPFLPVVYTT SKGIPPPGPQ  480
WNSFLTTVCP TLEKSLPTPP AFTMDDPATK PNFYPRPQQP WLVEEYYPER PGQPDCSYFI  540
KTGDCKYKAN CKFHHPKTQN FKTNLSILSN KGLPLRPGQP VCSFYSRYGI CKFGPGCKFD  600
HPENNDNVAS PPAFGFYQPP FGNSATTDGS RMARKGNGNG SLVHQSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	4e-90	C3H family protein