PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU15010.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

LBD

Protein Properties

Length: 333aa MW: 38094.7 Da PI: 6.1896

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU15010.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	120.4	9.7e-38	66	165	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+s ++k++++l++ +++am+++++++++ra+dPv G++++i++lq++++ k+el+ + + PHU15010.1 66 ACAACKYQRRKCAPDCALAPYFPHDRQRQFLNAHKLFGVSSITKIIRHLDQPLKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQRHIDYCKTELDIVLH 164 7********************************************************************************************998877 PP DUF260 100 e 100 + PHU15010.1 165 Q 165 6 PP

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence
MQNQMTSFST SNNNNIAIHH HHHQTPHTFI SDHNNLNHHK YTKRVHNNND NNHKNVLLRV 60 SGAGQACAAC KYQRRKCAPD CALAPYFPHD RQRQFLNAHK LFGVSSITKI IRHLDQPLKD 120 EAMRTIIFQS DVRANDPVGG CYRIIRDLQR HIDYCKTELD IVLHQLAYCR AQAVAAAAVS 180 EQQQILTDHH AADQESFNDN NCDGVVNQAD PLVNNNNASP YEQQPIDQYH PHDSYYNHPH 240 DQQTEDDQQY DEIQDGQLDL ADINFPWSLH EQESTSTSAP NSMMKQLSVN DQCDNIKEPI 300 LEGISGFGSF EQDQIFDQHS YSTREHTPIE GRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-52	LBD family protein