PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU14561.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

MIKC_MADS

Protein Properties

Length: 215aa MW: 25129.7 Da PI: 8.9977

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU14561.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	88.7	3.1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ nrqvt+skRrngi+KKA E+ vLCda+v++iif+++gk++ey+s PHU14561.1 9 KRIENSNNRQVTYSKRRNGIIKKAREITVLCDAKVSLIIFGTSGKMHEYCS 59 79***********************************************96 PP
2	K-box	81.9	1.4e-27	71	169	1	99
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yqk+sg++l++ak+e+l++e++++kke++++q ++Rhl+Ged++sL++keL+ +e++Le++l++i +k++e+l++ ++ q e+e+++ + aL++k + PHU14561.1 71 YQKASGRRLWDAKHENLSNEIDRIKKENDSMQVKLRHLKGEDINSLNHKELMVMEEALENGLSSISAKQSEILRMVRKNDQILEEEHKQLQYALHQKEM 169 8999********************************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence
MGRGKIEIKR IENSNNRQVT YSKRRNGIIK KAREITVLCD AKVSLIIFGT SGKMHEYCSP 60 STTMSDILDG YQKASGRRLW DAKHENLSNE IDRIKKENDS MQVKLRHLKG EDINSLNHKE 120 LMVMEEALEN GLSSISAKQS EILRMVRKND QILEEEHKQL QYALHQKEMA AMGGNMRGIH 180 EEAMYHQRER EDYEYQQMPF ALRVQPMQPN LHERM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	1e-87	MIKC_MADS family protein