PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PHU14498.1

Organism

Capsicum chinense

Taxonomic ID

80379

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum

Family

C3H

Protein Properties

Length: 289aa MW: 31283.5 Da PI: 7.2911

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PHU14498.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.6	2.5e-09	54	77	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ++ r+G+C yG+rC+F+H++ PHU14498.1 54 PDCGYYWRNGFCGYGARCRFNHPR 77 78********************96 PP
2	zf-CCCH	19.7	1.5e-06	232	256	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +++++Cr+ ++G+CkyG++Ck++H PHU14498.1 232 PGQPECRYCVKFGECKYGSSCKYHH 256 57899******************** PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MCSRTQPMDT APLTEVTSPG AETRLEEPIL QLSVGVGGGN GSGSELYPER PNAPDCGYYW 60 RNGFCGYGAR CRFNHPRNRS LVMEALRATI GEHPERFGQA VCQEPFLFPT AIPPPTTYPA 120 LQSPSIHSTE QYGMVFGNWP VLRPTLLSGS YLRGTYGPTL SPPEMVPMPD WTSYLAFASP 180 VASQSIQSAG VGPVYGPMQL SASILVGPCM SLTASPSASI NIQKEFAFLN RPGQPECRYC 240 VKFGECKYGS SCKYHHQRDG LGSAVSLLTV VCQGRGFETP LQRSWGEGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.2	4e-44	C3H family protein