PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU14426.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family MYB_related
Protein Properties Length: 400aa    MW: 43747.6 Da    PI: 5.0131
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU14426.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.11.5e-1198142347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT eE+  ++++ + +G g+W++I+r+   +Rt  q+ s+ qky
       PHU14426.1  98 AWTVEEHRSFLRGLAIYGRGDWRSISRHCVITRTSTQVASHAQKY 142
                      7***************************9989************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    
MSTDRTCNSS FWTKEEDKIF ETTLAIYFKG GDLLTKMEEA LPWKSSDDII NHYKILIEDV  60
EAIEFGRVPL PNYPELPSHS NQKNRSSKTD LAWRKGVAWT VEEHRSFLRG LAIYGRGDWR  120
SISRHCVITR TSTQVASHAQ KYFNHLKAVN KENRRMSIHD VTIVGADIAG TSQVPYTEGM  180
ILPACGGSQV VASTSNQSLL PQESTNAEQM LAVVGGESSG HSAAFVSGMN SMDPDEDDEF  240
IKHIDDLIVD PEDANESEFL VDGGRSLLAS KQPCTAGSSG TNNHPIFIVG SDLEALITKQ  300
MNEDYDFTFI LDDGEAPISH AMLSNASHSG MASFAVASNN AYNPPQNTVS AHSRMTSFAA  360
ASIGPNNAPQ NMVAAHPQSP HVAPSSNCVV GEWPQFKYYN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.13e-46MYB family protein