PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU14161.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 607aa    MW: 66560.1 Da    PI: 6.0935
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU14161.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3466.4e-1062406073374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 + ++++A+a+++g+++ a  +L+rls+ a  +g++ qRl+ay++ AL++r++          pp   +  +s++++ + + ++e+sP++k+++++aN a
  PHU14161.1 240 QSVVAAATAITDGKTNVAVDILTRLSQVADIRGSSEQRLTAYMVSALKSRVNF------TEYPPPVLE-LQSKKHAISAQNLYELSPCFKLGFMAANLA 331
                 67899***********************************************8......333333332.347777777899****************** PP

        GRAS 102 Ileavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 Ileav  +  +++H+iDfdi+qG+Q++ Ll+aLas++ ++p sl+iT++ +      ++++ +g+ L+ +A+++gv + fnv ++ +++dl+ e+L v+
  PHU14161.1 332 ILEAVVDQpsDKIHVIDFDIGQGGQYLHLLHALASKKtDEPTSLKITAITDFMGRADDRVNLIGDDLRTLADKIGVCLVFNV-TSCKITDLSRERLGVE 429
                 *****99989************************99845566*********8777**************************9.899************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 ++E+laVn++++l+rl+desv++e+ rde+L+ vk+lsPkvv++veqe++ n++ F++r+ ea  yy al+dsl+a++++++  r+k+E+  l+r++vn
  PHU14161.1 430 HDETLAVNFAYRLYRLPDESVTTENLRDELLRRVKGLSPKVVTLVEQELNGNTAAFVARVNEAYGYYGALLDSLDATVSKDEMGRAKIEEG-LSRKVVN 527
                 *******************************************************************************************.******* PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  vaceg++r+er+e ++kWr+r+++aGF+p p+s+++a++    l+  +  + g++v+e+sg +++gW++++L+++SaWr
  PHU14161.1 528 SVACEGRDRVERCEVFGKWRARMSMAGFGPRPMSQYIADSLLKRLNSDPrgNPGFTVNEQSGGICFGWMGKTLIVASAWR 607
                 ************************************999987777666557899*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    
MSSDYAGGVP DFYGGAGGIN TGRSTVIPMN HAQRSPLSGI LPEGAYQNLH RRQNFIAKRA  60
LADFQQQQQQ VQQGLGFYLR NVKPRSYQQA SPISPLVDFS SEFPSVSPIS VMNTRHALPI  120
VQTLRSQPVI PPANTNASEV LSSGNLNCSA VASYLNQVQN SLYQESEEKM MNRLQELEKE  180
LLEDSYGDEE DTGSIVTNNN EWSETIKNLI TPSSNHLSPA SSTSSCSSSI ESPTITSPKQ  240
SVVAAATAIT DGKTNVAVDI LTRLSQVADI RGSSEQRLTA YMVSALKSRV NFTEYPPPVL  300
ELQSKKHAIS AQNLYELSPC FKLGFMAANL AILEAVVDQP SDKIHVIDFD IGQGGQYLHL  360
LHALASKKTD EPTSLKITAI TDFMGRADDR VNLIGDDLRT LADKIGVCLV FNVTSCKITD  420
LSRERLGVEH DETLAVNFAY RLYRLPDESV TTENLRDELL RRVKGLSPKV VTLVEQELNG  480
NTAAFVARVN EAYGYYGALL DSLDATVSKD EMGRAKIEEG LSRKVVNSVA CEGRDRVERC  540
EVFGKWRARM SMAGFGPRPM SQYIADSLLK RLNSDPRGNP GFTVNEQSGG ICFGWMGKTL  600
IVASAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-148GRAS family protein