PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU13421.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C3H
Protein Properties Length: 361aa    MW: 39547.5 Da    PI: 7.3924
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU13421.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.97e-134469227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                +t++C+f++rtG C yG++C+++H+p
  PHU13421.1 44 GTPNCSFYMRTGSCGYGAQCRYNHPP 69
                79**********************97 PP

2zf-CCCH37.44.2e-1290114327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C++++rt tCkyG++CkF+H++
  PHU13421.1  90 EPICQYYLRTATCKYGASCKFHHPR 114
                 799********************96 PP

3zf-CCCH37.44.1e-12135159226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++ C+++++tG+Ck+G +CkF+H+
  PHU13421.1 135 EERVCSYYLKTGQCKFGLTCKFHHP 159
                 5789********************8 PP

4zf-CCCH40.74e-13264289126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ++++ C+++++tG Ck+G++CkF+H+
  PHU13421.1 264 PGQRVCQYYMQTGDCKFGSSCKFHHP 289
                 57899********************8 PP

5zf-CCCH37.15.3e-12311336227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 +  +C+ff++ G+Ck+G++CkF H++
  PHU13421.1 311 GVQPCSFFMQRGFCKFGGTCKFDHPM 336
                 6789********************95 PP

Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MEMYGGSQSD QQPEWVPVGP ETGLEESMRR LGLWSNEGYP ERSGTPNCSF YMRTGSCGYG  60
AQCRYNHPPD LTSVGVVPLE RSEYPERIGE PICQYYLRTA TCKYGASCKF HHPRNLGGSL  120
SNVPLNEYGY PLRPEERVCS YYLKTGQCKF GLTCKFHHPN PAEVSAPVTA RPFYPTVPSL  180
PAPLEETRPQ LLPSSYVPGT YGPVLLHPGL ATVQNWSTYS APGSLALSQL ASSTPAIAAP  240
YSSLHLADGP SSSALQEKHF PERPGQRVCQ YYMQTGDCKF GSSCKFHHPA DWSPSKTDCA  300
VNSLGLPLRP GVQPCSFFMQ RGFCKFGGTC KFDHPMGTVR DSSSASSLPD IPNAPYMSSP  360
E
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.11e-144C3H family protein