PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PHU13421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
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Family | C3H | ||||||||
Protein Properties | Length: 361aa MW: 39547.5 Da PI: 7.3924 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.9 | 7e-13 | 44 | 69 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +t++C+f++rtG C yG++C+++H+p PHU13421.1 44 GTPNCSFYMRTGSCGYGAQCRYNHPP 69 79**********************97 PP | |||||||
2 | zf-CCCH | 37.4 | 4.2e-12 | 90 | 114 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C++++rt tCkyG++CkF+H++ PHU13421.1 90 EPICQYYLRTATCKYGASCKFHHPR 114 799********************96 PP | |||||||
3 | zf-CCCH | 37.4 | 4.1e-12 | 135 | 159 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+++++tG+Ck+G +CkF+H+ PHU13421.1 135 EERVCSYYLKTGQCKFGLTCKFHHP 159 5789********************8 PP | |||||||
4 | zf-CCCH | 40.7 | 4e-13 | 264 | 289 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+++++tG Ck+G++CkF+H+ PHU13421.1 264 PGQRVCQYYMQTGDCKFGSSCKFHHP 289 57899********************8 PP | |||||||
5 | zf-CCCH | 37.1 | 5.3e-12 | 311 | 336 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C+ff++ G+Ck+G++CkF H++ PHU13421.1 311 GVQPCSFFMQRGFCKFGGTCKFDHPM 336 6789********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence |
MEMYGGSQSD QQPEWVPVGP ETGLEESMRR LGLWSNEGYP ERSGTPNCSF YMRTGSCGYG 60 AQCRYNHPPD LTSVGVVPLE RSEYPERIGE PICQYYLRTA TCKYGASCKF HHPRNLGGSL 120 SNVPLNEYGY PLRPEERVCS YYLKTGQCKF GLTCKFHHPN PAEVSAPVTA RPFYPTVPSL 180 PAPLEETRPQ LLPSSYVPGT YGPVLLHPGL ATVQNWSTYS APGSLALSQL ASSTPAIAAP 240 YSSLHLADGP SSSALQEKHF PERPGQRVCQ YYMQTGDCKF GSSCKFHHPA DWSPSKTDCA 300 VNSLGLPLRP GVQPCSFFMQ RGFCKFGGTC KFDHPMGTVR DSSSASSLPD IPNAPYMSSP 360 E |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-144 | C3H family protein |