PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PHU13260.1
Organism
Capsicum chinense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family GRAS
Protein Properties Length: 449aa    MW: 50472.1 Da    PI: 7.4228
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PHU13260.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS396.43.1e-121624362361
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetsekn........sseelaal....kl... 83 
                 ++lL++cAe +s +d+++a++lL+ ls ++sp gd+++Rl++ ft+AL+ rl+r  s+s++ + l+p ++  ++        ss+          l   
  PHU13260.1  62 RQLLISCAELISRSDFSAANRLLNILSANSSPFGDSTERLVHQFTRALSLRLNRyiSSSTTNHFLTPVTSIIETapadssssSSS----SlsslALlqs 156
                 89****************************************************7445555555555544433334434333222....1334422444 PP

        GRAS  84 ....fsevsPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                     +++v+P+++f++ltaNqaIlea++g+ +++Hi+Dfdi++G+QWp+L+qaLa+R  ++p+lRiTg g+    + ++l++tg+rLakfA++lg++f+
  PHU13260.1 157 sylsLNQVTPFIRFTQLTANQAILEAINGNqQAIHIVDFDINHGVQWPPLMQALADR-YPAPTLRITGTGN----DLDTLRRTGDRLAKFAHSLGLRFQ 250
                 5667*************************98999**********************9.899**********....************************ PP

        GRAS 178 fnvl..vakrledleleeL...rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl 271
                 f++l  +++r +d +++ +    + p+E+la+n+v+ lhrll+++ +l+     +L+ vks++Pk+v+++e+ea+hn++ Fl+rf+eal+yy+a+fdsl
  PHU13260.1 251 FHPLyiASNRDHDEDPSIIssiVLLPDETLAINCVFYLHRLLKDREKLRV----FLHRVKSMNPKIVTIAEREANHNHPLFLQRFVEALDYYTAVFDSL 345
                 ****7544466666665551116677****************88888888....********************************************* PP

        GRAS 272 eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361
                 ea+lp+ s+er++vE++++grei ++va eg++r+erhe++++W+ +++++GF++v+ls +a +qaklllr ++ s+gy++   s+s++lg
  PHU13260.1 346 EATLPPGSRERMTVEQVWFGREILDIVAIEGEKRKERHERFRSWEVMFRSCGFSNVALSPFALSQAKLLLRLHYpSEGYQLRVLSNSFLLG 436
                 ***********************************************************************************99999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    
MLGSFGSSSS QSHSHPHHHE EQESTDHHHD DHQRRRFIAA AATTTTATTT ITATISPVIQ  60
IRQLLISCAE LISRSDFSAA NRLLNILSAN SSPFGDSTER LVHQFTRALS LRLNRYISSS  120
TTNHFLTPVT SIIETAPADS SSSSSSSLSS LALLQSSYLS LNQVTPFIRF TQLTANQAIL  180
EAINGNQQAI HIVDFDINHG VQWPPLMQAL ADRYPAPTLR ITGTGNDLDT LRRTGDRLAK  240
FAHSLGLRFQ FHPLYIASNR DHDEDPSIIS SIVLLPDETL AINCVFYLHR LLKDREKLRV  300
FLHRVKSMNP KIVTIAEREA NHNHPLFLQR FVEALDYYTA VFDSLEATLP PGSRERMTVE  360
QVWFGREILD IVAIEGEKRK ERHERFRSWE VMFRSCGFSN VALSPFALSQ AKLLLRLHYP  420
SEGYQLRVLS NSFLLGSCPQ QAEAAPCHV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-120GRAS family protein